Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B11f
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.004
SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)         38   0.004
SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15)           31   0.34 
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_40681| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +3

Query: 357 DWLRVVASAHDAYELRYFNIN 419
           DWLRVVA+ H +YELRYF I+
Sbjct: 18  DWLRVVAADHTSYELRYFQIS 38


>SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)
          Length = 50

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +3

Query: 357 DWLRVVASAHDAYELRYFNIN 419
           DWLRVVA+ H +YELRYF I+
Sbjct: 18  DWLRVVAADHTSYELRYFQIS 38


>SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15)
          Length = 711

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 135 IDCTHPAEDSILDVGNFEKYL--KEHVKVEGKTNNLSNHVV 251
           + C H +E S L   + + Y   K   KVE   NNLSNHV+
Sbjct: 376 LPCVHSSETSELFAQDLKMYYVQKAFSKVEPMLNNLSNHVI 416


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 38  KSPIASED-WQKRSEGWQNPRQRH 106
           KSP+A      +R+E W++PR+RH
Sbjct: 212 KSPVARRPPVVERAEDWESPRRRH 235


>SB_40681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 159 DSILDVGNFEKYLKEHV-KVEGKTNNLSNHVVVARDKTKVAITADIP 296
           D ++ V    KYLK+HV  V G    + NHV+        A+   IP
Sbjct: 2   DHVIHVIGHAKYLKDHVIPVIGYVKAVMNHVIPVIGHVTTAMDHMIP 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,256,317
Number of Sequences: 59808
Number of extensions: 188898
Number of successful extensions: 367
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)