Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B11f
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id...    88   3e-18
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id...    88   3e-18
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo...    87   5e-18
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi...    77   4e-15
At3g56700.1 68416.m06307 male sterility protein, putative simila...    28   2.6  
At3g62670.1 68416.m07040 two-component responsive regulator fami...    28   3.4  
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain...    27   7.8  
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran...    27   7.8  

>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
 Frame = +3

Query: 123 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFS 302
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V + R+K+K+ +TAD  FS
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFS 75

Query: 303 XXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNI 416
                             DWLRV+A+  D   YELRYFNI
Sbjct: 76  KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNI 115


>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
 Frame = +3

Query: 123 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFS 302
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V + R+K+K+ +TAD  FS
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFS 75

Query: 303 XXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNI 416
                             DWLRV+A+  D   YELRYFNI
Sbjct: 76  KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNI 115


>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
           ribosomal protein L22 (cytosolic), Rattus norvegicus,
           PIR:S52084
          Length = 124

 Score = 87.0 bits (206), Expect = 5e-18
 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
 Frame = +3

Query: 123 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFS 302
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V + R+K+K+ +TAD  FS
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFS 75

Query: 303 XXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNI 416
                             DWLRV+A+  D   YELRYFNI
Sbjct: 76  KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNI 115


>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
           to ribosomal protein L22 GI:710294 from [Rattus
           norvegicus]
          Length = 127

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
 Frame = +3

Query: 123 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFS 302
           + F IDC+ P +D+IL++   EK+L+E +KV GK   L N V + R   K+ + A+  FS
Sbjct: 18  VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFS 77

Query: 303 XXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYFNIN 419
                             DWLRV+AS  D   YE+RYF I+
Sbjct: 78  KRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRID 118


>At3g56700.1 68416.m06307 male sterility protein, putative similar
           to SP|Q08891 Male sterility protein 2 {Arabidopsis
           thaliana}; contains Pfam profile PF03015: Male sterility
           protein
          Length = 527

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 141 CTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV 251
           C  P E++++D+    +++K H  +EG T+ LSN ++
Sbjct: 402 CDFPLEETVIDL----EHMKIHSSLEGFTSALSNTII 434


>At3g62670.1 68416.m07040 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 426

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 189 KYLKEHVKVEGKT-NNLSNHVVVARDKTKVAITADIP 296
           KY++E + V+G T NN+++H+   R  +K   T   P
Sbjct: 244 KYMQEELNVQGLTRNNVASHLQKYRQSSKKTCTPQEP 280


>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to glucocorticoid receptor DNA binding factor
           1 [Canis familiaris] GI:23266717; contains Pfam profiles
           PF00169: PH domain, PF00620: RhoGAP domain
          Length = 827

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 428 AVSVDVEVAQFVSVMS-GGHHSKPVTQIVLLEVT 330
           A S+ + + ++  VM  G HH  P T   L+E+T
Sbjct: 754 AASLGIPMEEYSPVMDYGRHHHPPATSAALMELT 787


>At3g60970.1 68416.m06823 ABC transporter family protein ABC
           transporter-like proteins
          Length = 1037

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 217 STLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 107
           S       YF   PT +IL+ A   QS+++ ++  +L
Sbjct: 563 SIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKL 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,760,844
Number of Sequences: 28952
Number of extensions: 127142
Number of successful extensions: 304
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)