Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B09f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   0.94 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    23   2.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   5.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.6  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.7  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   8.7  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   8.7  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 139 PSAASLGTAEPYARSPQTGPAYAPP 65
           P  A    A P + S  T PA APP
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPP 35


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 218 RTSAAPTRDGRSPSAALTPHSVYIWCGEERAK 313
           R  +AP R+  +    LTP  V IW    R K
Sbjct: 63  RYLSAPEREHLASIIRLTPTQVKIWFQNHRYK 94


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 240 LVGAAEVLGGDIAVGLPGGGARDHKSEDMGVGAVLQPRRSVQQSH 106
           ++ AA+V GG+   G PGG    H      +GA +   R+ +  H
Sbjct: 179 MMKAAQVSGGNNNNGTPGG----HSGFWGQLGAAVDESRTPRPKH 219


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 124  ATRLKDRADTHVFTFVVTRS 183
            +  LKD  D  VFTF++  S
Sbjct: 1215 SAELKDLRDKMVFTFLMLNS 1234


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 124  ATRLKDRADTHVFTFVVTRS 183
            +  LKD  D  VFTF++  S
Sbjct: 1215 SAELKDLRDKMVFTFLMLNS 1234


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 437 LPRPWAAHPALNRTCLP 387
           LP P AAH AL    +P
Sbjct: 119 LPHPAAAHSALLSPAMP 135


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 85  GPAYAPPWQHTLRAGGGCGGV 23
           GP YAP    +   GGG  G+
Sbjct: 74  GPPYAPHPSLSSGLGGGLSGM 94


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -1

Query: 314 PSHAPLHTRYTPSEVSVRLKATAHLWWAQ 228
           P++AP+H+ Y       ++     +W  Q
Sbjct: 20  PANAPMHSWYAGYHQGAQMGPEQQMWEPQ 48


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -1

Query: 314 PSHAPLHTRYTPSEVSVRLKATAHLWWAQ 228
           P++AP+H+ Y       ++     +W  Q
Sbjct: 20  PANAPMHSWYAGYHQGAQMGPEQQMWEPQ 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,306
Number of Sequences: 336
Number of extensions: 2339
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)