Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    27   2.2  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   3.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   6.8  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   6.8  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   6.8  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   9.0  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   9.0  

>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 27  PPHPPPALSVCC 62
           PPHPP A  +CC
Sbjct: 238 PPHPPKADDICC 249


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 322 VYVDFTFTLLSRDHFTANEGFSGKQVRFSAGCAAQGRGRCVSLAELN 462
           +++   FTL   +  TA E  +GK+V F  G    G   C S   L+
Sbjct: 80  LHLGHAFTLSKVEFTTAFERLNGKRVLFPMGFHCTGMPICASADRLS 126


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 428  PWAAHPALNRTCLPEKPSLAV 366
            PW + P LNR  +   PSL++
Sbjct: 1607 PWESLPCLNRQSVSRVPSLSI 1627


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +2

Query: 407 APDALPKVAADACRSRSLTPSSRTHAANFNLNL 505
           +PD    +   +C    + P+ +TH  NF +++
Sbjct: 227 SPDGQADIYCYSCDEERIDPNIKTHMLNFGIDI 259


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 26/104 (25%), Positives = 40/104 (38%)
 Frame = -1

Query: 374 LAVKWSRLRRVKVKST*TLIPSHAPLHTRYTPSEVSVRLKATAHLWWAQQKSLEVTSRSG 195
           +A K + L   KV      I S +      TPS V+   K  A    A++       +  
Sbjct: 9   IASKANTLSESKVSENLMSINSDSGTSNANTPSSVTSNSKPVASSTAAKKDPNAPPQKVK 68

Query: 194 SLVAERVTTKVKTWVSARSFSRVARYSRAIRSLAADRPSLCASL 63
             V E  T         R+F+R+    R IRS   ++P  C+ +
Sbjct: 69  QYVCETCT---------RAFARLEHLKRHIRSHTNEKPFTCSEI 103


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 371 PTKASPASRFGSAPDALPKVAADACRSRSLTPSSRTHAANFNLNLLC 511
           PTKASP S+  ++  A+P  +  A  +++ T  S     N + NLLC
Sbjct: 20  PTKASPDSKSPNSVGAIPSSSPLASSTKAST--STPFVENCS-NLLC 63


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 92  RRASVWLCCTERRG*RTAPTPMSSLLWSR 178
           ++A  W+CC E         P    LWSR
Sbjct: 450 KQALYWMCCKEEGVQSDGSAPKLHPLWSR 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,445
Number of Sequences: 5004
Number of extensions: 38122
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)