Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302B09f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26) 30 1.3
SB_34265| Best HMM Match : rve (HMM E-Value=0.0015) 30 1.3
SB_985| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_13009| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21) 29 3.1
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19) 28 4.1
SB_27497| Best HMM Match : Death (HMM E-Value=0.028) 28 5.4
SB_56311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29) 27 7.1
SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_15396| Best HMM Match : Plasmod_Pvs28 (HMM E-Value=1.8) 27 9.4
SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26)
Length = 1128
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 206 SRSGSLVAERVTTKVKTWVSARSFSRVARYSR-AIRSLAADRPSLCASLATYTEGGRRVR 30
++S L + K A S +RV RYSR A+R +A+ PS+ + YT G R
Sbjct: 206 TKSAILTVQYKPENTKLIKLAPSSNRVGRYSRIALRCIASANPSV-TNYMIYTNGTRSYT 264
Query: 29 G 27
G
Sbjct: 265 G 265
>SB_34265| Best HMM Match : rve (HMM E-Value=0.0015)
Length = 1069
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +2
Query: 395 RFGSAPDALPKVAADACRSRSLTPSSRTHA 484
RF SA ALP+ A A R R L S R+HA
Sbjct: 657 RFVSAVSALPEQTATALRQRWLPGSDRSHA 686
>SB_985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 151 CRRGPSAASLGTAE-PYARSPQTGPAYAPPWQHTLRAGGGCGGVR 20
C +GP A LGT + P PQ P Y PP Q G GG +
Sbjct: 147 CAQGPYQAPLGTYQGPAPPYPQL-PGYGPPLQGDYPGGYVAGGAQ 190
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -3
Query: 405 EPNLLAGEAFVGCKMVXA*KSKSEVYVNPHSFARSSPHQIYTE*GVSAAEGDRPS 241
EP + EAF+ K A K+ +E ++N + PH +Y + EGD S
Sbjct: 516 EPMIRPSEAFILLK-TSALKAYTETHINLSGRPTNRPHTLYRTTTIEPQEGDNTS 569
>SB_13009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 323 TLIPSHAPLHTRYTPSEVSVRLKATAHLWWAQQKSLEVTSR 201
T +PS+ R TP + RL + H+W Q ++ + SR
Sbjct: 7 TPVPSNRGFGHRITPVLIKPRLSPSNHIWSHQTEAFAIKSR 47
>SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21)
Length = 319
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 FSRTDTSLGVYLVWRGACEGMR-VYVDFTFTLLSRDHFTANEGFSGKQVRFSAGCAAQGR 432
FS+ +S+G + V GA G R VY+ T S A+ G+ G +R + C + +
Sbjct: 53 FSQPASSIGAWQV-SGAHPGYRGVYIQDTGACTSGIQGRAHTGYRGVHIRDTGACISGIQ 111
Query: 433 GR 438
GR
Sbjct: 112 GR 113
>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
Length = 413
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -2
Query: 151 CRRGPSAASLGTAE-PYARSPQTGPAYAPPWQHTLRAGGGCGG 26
C +GP A LGT + P PQ P Y PP Q L C G
Sbjct: 343 CAQGPYQAPLGTYQGPAPPYPQL-PGYGPPLQGELPGRICCWG 384
>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
Length = 892
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/60 (28%), Positives = 21/60 (35%)
Frame = +3
Query: 84 PVCGERAYGSAVPSDAAEGPRRHPCLHFCGHALRHQGARPRCHLQGLLLRPPEMGGRLQP 263
PVC + G S G R C+H+ A R RC +P R QP
Sbjct: 648 PVCVDLNVGRPCLSHGVLGCTRDSCMHYISEAELRMSDRVRCLQSPAATQPVIDADRYQP 707
>SB_56311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 395 CLPEKPSLAVKWSRLRRVKVK 333
CLP+KP +W+ +RRV V+
Sbjct: 60 CLPDKPVSMTEWTVIRRVDVE 80
>SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 359 TILQPTKASPASRFGSAPDALPKVAADACRSRSLTPSSRTHAAN 490
++L PT S FG A P++ C S + PSSR+++++
Sbjct: 12 SMLLPTSYHIQSLFGEAYRNQPRIFVTECPSPTTPPSSRSNSSS 55
>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 157 HGCRRGPSAASLGTAEPYARSPQTGPAYAPPWQHTLRAGGG 35
H RG S A Y+ PQTGP Y P Q ++A G
Sbjct: 139 HSLTRGDLQPSSDRA--YSYPPQTGPIYQPHGQFPMQAKHG 177
>SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 107 IRSLAADRPSLCASLATYTEGGRRVRGGPEA 15
I LAA P LC++ GG R+ GG EA
Sbjct: 6 IALLAATLPFLCSAECGVKPGGSRIVGGTEA 36
>SB_31528| Best HMM Match : DDHD (HMM E-Value=2e-29)
Length = 1123
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = -1
Query: 206 SRSGSLVAERVTTKVK-TWVSARSFSRVARYSRAIRSLA---ADRPSLCASLATYTE 48
SR G+ + + VK TW S F+R YS + S D PS S+A+ TE
Sbjct: 479 SRFGATLKASLIESVKNTWESINEFARAHAYSDGVVSSTQQQIDPPSTPTSIASDTE 535
>SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +1
Query: 40 RPPSVYVAREA-HRLGRSAA-SERMALLYRATRLKDRADTHVFTFVVTRSATREPDRDVT 213
RPP + + RL S S R +L +T+ K+R H F TR+ D D
Sbjct: 261 RPPQTLLPQVTPERLALSQRLSCRTMILGHSTQNKNRLSAHAFLIAPEPCVTRQCDHDCR 320
Query: 214 SKDFCCAH 237
C H
Sbjct: 321 YCGHDCGH 328
>SB_15396| Best HMM Match : Plasmod_Pvs28 (HMM E-Value=1.8)
Length = 356
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 273 GVSAAEGDRPSLVGAAEVLGGDIAVGLPGGGA 178
GV AA +V A +GG +A G P GGA
Sbjct: 282 GVVAAGAAVGGVVAAGAAVGGVVAAGAPVGGA 313
>SB_13743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 147 RHPCLHFCGHALRH 188
RH C H C HA RH
Sbjct: 95 RHACRHACSHARRH 108
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,674,195
Number of Sequences: 59808
Number of extensions: 343677
Number of successful extensions: 1220
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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