Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302B09f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical... 30 0.87
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical... 30 0.87
Z93396-4|CAB07713.1| 230|Caenorhabditis elegans Hypothetical pr... 29 2.7
U28412-6|AAC46596.2| 489|Caenorhabditis elegans Hypothetical pr... 28 3.5
U21323-7|AAA62551.1| 465|Caenorhabditis elegans Hypothetical pr... 28 3.5
AF016657-13|AAB93657.1| 274|Caenorhabditis elegans Hypothetical... 28 4.7
Z46676-2|CAA86662.1| 507|Caenorhabditis elegans Hypothetical pr... 27 6.2
U40060-3|AAA81142.2| 974|Caenorhabditis elegans Hypothetical pr... 27 8.1
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr... 27 8.1
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr... 27 8.1
>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
protein Y105C5B.21b protein.
Length = 1084
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 160 RHGCRRGPSAASLGTAEPYARSPQTGPAYAPPWQHTLRAGGGCGGV 23
R G R SA S Y + P+ GP Y+ + + R GGG G +
Sbjct: 1034 RAGTLRPASATSQTIQRRYDQVPRDGPVYSSVQKPSPRGGGGGGNI 1079
>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
protein Y105C5B.21a protein.
Length = 1254
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 160 RHGCRRGPSAASLGTAEPYARSPQTGPAYAPPWQHTLRAGGGCGGV 23
R G R SA S Y + P+ GP Y+ + + R GGG G +
Sbjct: 1204 RAGTLRPASATSQTIQRRYDQVPRDGPVYSSVQKPSPRGGGGGGNI 1249
>Z93396-4|CAB07713.1| 230|Caenorhabditis elegans Hypothetical
protein ZC15.6 protein.
Length = 230
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 65 GRRIGWAGLRRASVWLCCTERRG*RT-APTPMSSLLWS 175
GR++G AG A +WL T R G + A P+++ +W+
Sbjct: 112 GRKLGAAGGGIAGLWLGATTRAGCKAGACGPLNTFMWT 149
>U28412-6|AAC46596.2| 489|Caenorhabditis elegans Hypothetical
protein T19C3.5 protein.
Length = 489
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/49 (20%), Positives = 26/49 (53%)
Frame = -1
Query: 290 RYTPSEVSVRLKATAHLWWAQQKSLEVTSRSGSLVAERVTTKVKTWVSA 144
+++ ++ +L T WW +++++ R + E +T + K W++A
Sbjct: 77 KFSSPKIDFKLSKTGINWWTTGGAIKLSGRWHAKFTEVITIRDKGWLNA 125
>U21323-7|AAA62551.1| 465|Caenorhabditis elegans Hypothetical
protein C45G9.8 protein.
Length = 465
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 58 VAREAHRLGRSAASERMALLYRATRLKDRADTHVFTFVVTRSATREPDRDVTSKD 222
+++ A S+++ ++ + K R+ T V T ++ S PD+D SKD
Sbjct: 108 ISKSATEKKTKTGSKKVTRSKKSKKTKRRSSTTVTTTTISNSKPVTPDKDKDSKD 162
>AF016657-13|AAB93657.1| 274|Caenorhabditis elegans Hypothetical
protein C16C4.12 protein.
Length = 274
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 244 WAVAFSRTDTSLGVYL-VWRGACEGMRVYVDFTFTLLSRD 360
W + F R D LG+YL + CE + V+FT L+S++
Sbjct: 32 WRIDFCRNDDYLGLYLKCEKEECE-WSIEVEFTLKLVSQN 70
>Z46676-2|CAA86662.1| 507|Caenorhabditis elegans Hypothetical
protein C08B11.2 protein.
Length = 507
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 82 PAYAPPWQH-TLRAGGGCGGVRRLRH 8
P +A W + TL AGG G RRL H
Sbjct: 122 PIFAGLWDYCTLYAGGSVEGARRLNH 147
>U40060-3|AAA81142.2| 974|Caenorhabditis elegans Hypothetical
protein F38B6.4 protein.
Length = 974
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 270 VSAAEGDRPSLVGAAEVLGGDIAVGLPGGG 181
++A E P L ++E+ GD+ +GLP G
Sbjct: 578 IAARESTWPMLPLSSEIRDGDVILGLPSSG 607
>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical protein
T23F2.2b protein.
Length = 1538
Score = 27.1 bits (57), Expect = 8.1
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 52 VYVAREAHRLGRSAASERMALLYRATRLKDRADTHVFTFVVTRSATREP--DRDVTSKDF 225
V+ +E +LG S AS +++ R+ L ++ + +RSA R P +D SK
Sbjct: 1260 VHEPQEPFQLGSSKASLSCSIMIRSNSLDRKSQPREQSRQRSRSANRRPPVSKDELSKRE 1319
Query: 226 CCAHQRWAVAFSRTDTSLGVYL 291
R SR+ + +YL
Sbjct: 1320 KRREMRLPKGVSRSSSVTSLYL 1341
>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical protein
T23F2.2a protein.
Length = 1534
Score = 27.1 bits (57), Expect = 8.1
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 52 VYVAREAHRLGRSAASERMALLYRATRLKDRADTHVFTFVVTRSATREP--DRDVTSKDF 225
V+ +E +LG S AS +++ R+ L ++ + +RSA R P +D SK
Sbjct: 1260 VHEPQEPFQLGSSKASLSCSIMIRSNSLDRKSQPREQSRQRSRSANRRPPVSKDELSKRE 1319
Query: 226 CCAHQRWAVAFSRTDTSLGVYL 291
R SR+ + +YL
Sbjct: 1320 KRREMRLPKGVSRSSSVTSLYL 1341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,619,190
Number of Sequences: 27780
Number of extensions: 238429
Number of successful extensions: 869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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