Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie...    30   0.82 
At5g55840.1 68418.m06958 pentatricopeptide (PPR) repeat-containi...    29   1.4  
At1g34270.1 68414.m04253 exostosin family protein contains Pfam ...    29   1.4  
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea...    29   1.9  
At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR...    29   2.5  
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu...    29   2.5  
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu...    29   2.5  
At2g27770.1 68415.m03365 expressed protein                             29   2.5  
At5g38850.1 68418.m04699 disease resistance protein (TIR-NBS-LRR...    28   3.3  
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf...    28   4.4  

>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
           PIR:S53363
          Length = 438

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 371 PTKASPASRFGSAPDALP--KVAADACRSRSLTPSSRTHAA 487
           P+  S  SR  +     P  K A DA RSRSLTP ++   A
Sbjct: 167 PSPTSTPSRISTTTSTTPSFKTAGDAQRSRSLTPRAKPQIA 207


>At5g55840.1 68418.m06958 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 1274

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +1

Query: 136 KDRADTHVFTFVVTRSATREPDRDVTSKDFCCAHQRWAVAFSRTDTSLGVYLVWRGAC-- 309
           KD  D  + T+    +   +  R  T+K+  C   R  ++ +    S  +Y   R  C  
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 310 EGMRVYVDFTFTLLSRDHFTAN 375
           E +R+Y        +RDHFT N
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFN 512


>At1g34270.1 68414.m04253 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 477

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 126 DAAEGPRRHPCLHFCGHALRHQGARPRCHLQGLLLRPP 239
           D ++  RRH  L+F G   RH+G   R  L  LL+  P
Sbjct: 273 DLSQNQRRHSLLYFKGAKHRHRGGLIREKLWDLLVNEP 310


>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400) (1
           weak); similar to Hypothetical RAE1-like
           protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
           mRNA-associated protein mrnp 41 ((mRNA export protein)
           (GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
           [Homo sapiens]
          Length = 349

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = -1

Query: 221 SLEVTSRSGSLVAERVTTKVKTWVSARSFSRVARYSRAIRSLAADRPSLCAS 66
           SL  + R+  LVA     +V+ W  +RS + +A   +A  S++ D+P LC++
Sbjct: 30  SLSFSPRADILVATSWDNQVRCWEISRSGASLASAPKA--SISHDQPVLCSA 79


>At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1085

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 380 PSLAVKWSRLRRVKVKST*TLIPSHAP 300
           PS+A  WSRL R+++ S    I +HAP
Sbjct: 736 PSVAGSWSRLARLEIGSRSLKILTHAP 762


>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 275 EVSVRLKATAHLWWAQQKSLEVTSRSGSLVAERVTTKVKTWVSAR 141
           E+ +  +  AHL W +QK        G  VAE  T  V  WV +R
Sbjct: 271 EIKMEKEGHAHLAWKEQKDY----HRGKRVAEGSTANVDPWVVSR 311


>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
           EMBL:AB009883
          Length = 918

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 275 EVSVRLKATAHLWWAQQKSLEVTSRSGSLVAERVTTKVKTWVSAR 141
           E+ +  +  AHL W +QK        G  VAE  T  V  WV +R
Sbjct: 271 EIKMEKEGHAHLAWKEQKDY----HRGKRVAEGSTANVDPWVVSR 311


>At2g27770.1 68415.m03365 expressed protein
          Length = 320

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 328 VDFTFTLLSR-DHFTANEGFSGKQVRF 405
           + F F+L+SR +HFT N  F   +VRF
Sbjct: 172 IGFDFSLVSRQEHFTGNNTFYSTKVRF 198


>At5g38850.1 68418.m04699 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 407 LNRTCLPEKPSLAVKWSRLRRVKV-KST*TLIPSHAPLHTRY 285
           ++ T + E P     WSRLR +++ KS    I +H PL+  Y
Sbjct: 712 ISYTDVEELPESMTMWSRLRTLEIYKSRNLKIVTHVPLNLTY 753


>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 654

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 221 TSAAPTRDGRSPSAALTPHSVYIWCGEERAK 313
           TSA+ T DG+   +A    +VYIW  +E ++
Sbjct: 507 TSASLTSDGKHIVSACEDSNVYIWSNDEESE 537


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,307,438
Number of Sequences: 28952
Number of extensions: 236370
Number of successful extensions: 1041
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)