Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz...    29   0.56 
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    28   0.97 
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   1.3  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    27   2.2  
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    26   3.0  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    26   3.9  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   3.9  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    25   6.8  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   6.8  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   6.8  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    25   6.8  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   9.0  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    25   9.0  

>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 9   GIRSLWEKNDATLTTDKEETERGATVTIALLK 104
           G+R+ +   +A +++++E  E G TV +ALLK
Sbjct: 282 GLRAAFGNAEAVVSSEEEAEELGITVALALLK 313


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 83  GHNR-SFESKDSLPEWVTYEGVWDMETQDPV-KEFIRAI 193
           G+NR SF+SK+ LP+W   E     +   P+ KE + A+
Sbjct: 647 GYNRWSFQSKEGLPDWFLDEETTVNKPNKPITKEAVLAL 685


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 65  NRKRSNG-HNRSFESKDSLPEWVTYEGVWDMETQDPVKEFIRAI 193
           NRK S G H R    +     W+ +   W  +T DPV    RA+
Sbjct: 578 NRKESRGAHAREDYPERDDKNWIKHTLTWQHKTGDPVTLKYRAV 621


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 29  KERRNSYHGQRRNRKRSNGHNRSFESKDSLPEWVTYEGVWDMETQDPVKEFIRAIA-LDE 205
           KE+RN+   +R+++K      ++  S +   E V+  G  + E  D + E   A++ L+E
Sbjct: 526 KEKRNTRREKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQETENDDLIDEESDALSELEE 585

Query: 206 GY 211
            Y
Sbjct: 586 DY 587


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
 Frame = +2

Query: 8   RNKKFVGKERRNSYHGQRRNRK-------RSNGHNRSFESKDSLPEWVTY--EGVWDMET 160
           RN++ + KE R+S+H + + +          N  N+S ESK+S    V +  +    + T
Sbjct: 155 RNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGNKSLESKESNENKVVFKKKKSGKLRT 214

Query: 161 QDPVKEF 181
           +  +KE+
Sbjct: 215 KSSLKEY 221


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +2

Query: 137 EGVWDMETQDPVKEFIR--AIALDEGYGTCENTITDDIRNN 253
           +G+WD ++   V EF+R   +A       CEN +   I +N
Sbjct: 233 DGIWDCKSSQQVVEFVRRGIVARQSLEVICENLMDRCIASN 273


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 478 RKEVVKVDR*VLVFIIWSVLIPESLNAAIKLRFELG 371
           ++ V+   R +L F  W+VL+P        L F++G
Sbjct: 86  KQRVIFFTRVLLTFFCWTVLLPLIFKHVWNLNFKIG 121


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 259 WFVVADVISDGVFTSAISLIKSY 191
           WF++  VIS G   SA SL+K Y
Sbjct: 72  WFIMG-VISTGFAWSAYSLVKKY 93


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 479 KKGGRESRSVGPGIHHLECFDPREPQCCDQTSLRTWRKAPH 357
           K+   E RS+ P    ++ F+P +P C        W+KA H
Sbjct: 337 KRLSSELRSLAPANWEVKVFEPSDPICF------PWKKASH 371


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 328  IISKYPISIEVKSIIPIRYSIIKWFVVAD 242
            II +   ++E+ +IIP+RY   K  +V D
Sbjct: 1376 IIDEAAQAVELDTIIPLRYGAKKCILVGD 1404


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 137 EGVWDMETQDPVKEFIR 187
           +G+WD +T   V EF+R
Sbjct: 230 DGIWDCKTSQQVIEFVR 246


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 15  RSLWEKNDATLTTDKEETERGATVTI 92
           RSLW ++   L+  K+++E   T+T+
Sbjct: 802 RSLWLESKTILSDKKDDSEDSRTITL 827


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 350 ARVCVAPDHQQVPNQYRGQVHHPNQVQHYQ 261
           AR+   PD+Q+  N Y  Q+    Q+   Q
Sbjct: 259 ARLLTGPDYQKFVNSYHEQITLKKQISDLQ 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,108
Number of Sequences: 5004
Number of extensions: 40168
Number of successful extensions: 155
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)