Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302B08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107 31 0.74
04_04_0026 - 22222743-22222836,22223510-22223652,22224654-222246... 29 1.7
11_04_0207 - 14869288-14869291,14869484-14869776 28 4.0
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 4.0
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 28 4.0
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 28 5.2
10_07_0113 - 12993300-12993413,12993493-12993775,12993856-129940... 28 5.2
10_02_0183 + 6365523-6366245 28 5.2
07_01_1153 - 10842259-10842390,10843348-10845315 28 5.2
05_01_0608 + 5429901-5429982,5430610-5431058,5436758-5437183,543... 28 5.2
10_07_0024 - 11964126-11964542,11965235-11966176,11966245-119662... 27 6.9
08_01_1064 + 10841095-10842326,10842412-10842663,10842942-108430... 27 6.9
05_01_0574 + 5092209-5092963,5103988-5104654 27 6.9
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 27 6.9
10_02_0126 - 5543658-5543670,5543748-5543840,5544344-5544529,554... 27 9.1
09_02_0108 - 4358051-4358645,4358722-4359137,4360307-4360903,436... 27 9.1
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 27 9.1
>07_01_0167 + 1175694-1176015,1176129-1176803,1177064-1177107
Length = 346
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 207 DMALVKTPSLMTSATTNHLIMLYLIGMMDLTSILIGYLLMIWS 335
D+ ++ +P + NHL+M G M L ++ G+ L +WS
Sbjct: 206 DLTVIASPEIDDDDFENHLLMTTEDGGMGLARLVSGHSLQLWS 248
>04_04_0026 -
22222743-22222836,22223510-22223652,22224654-22224699,
22224916-22225043,22225178-22225285
Length = 172
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 334 LQIISKYPISIEVKSIIPIRYSIIKWFVVADVISDGVFTSAIS-LIKSYGTNK 179
+ I S P SI + S+ KWF V+ +G+F + LI Y T +
Sbjct: 117 ITIASADPQSISANKPVHFTKSVTKWFTKEGVLVEGLFWKDVERLIDDYNTER 169
>11_04_0207 - 14869288-14869291,14869484-14869776
Length = 98
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 228 PSLMTSATTNHLIMLYLIGMMDLTSILIGYLLMIWSHAHSRLPMRSFTPSSKR 386
PS+ T+ T L++L L G L S+ + + + S AHSR+ S + + +R
Sbjct: 4 PSITTTTTKLFLLLLLLHGGHCLKSLDMAMEMEMDSEAHSRMLWESSSSNGRR 56
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 506 SRVAVSRMGKKGGRESRSVGPGIHHLECFDPREPQCCDQTSLRTWRKAPH 357
+RVAV+ + +K V H+E FD R P+ Q + T KA H
Sbjct: 296 TRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSPEQPMQITRNTRPKADH 345
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 359 HRQARVCVAPDHQQVPNQYRGQVHHPNQVQHYQ 261
H Q + AP HQQ + Q HH N Q +Q
Sbjct: 34 HHQQQQTSAPHHQQYVQRQPQQHHHHNHHQQHQ 66
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 29 KERRNSYHGQRRNRKRSNGHNRSFESKDSLPEWVTYEGV 145
K RRNS+ G+R ++++NG +SLP+ V EG+
Sbjct: 332 KRRRNSFSGKRGRKRQNNG-------AESLPKRVQNEGM 363
>10_07_0113 -
12993300-12993413,12993493-12993775,12993856-12994026,
12994104-12994948,12995035-12995307,12995549-12995953
Length = 696
Score = 27.9 bits (59), Expect = 5.2
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +3
Query: 93 ALLKVRTAC--LSGLHMRVFGIWRPKIQSKSLFVP*LLMRDMALVKTPSLMTSATTNHLI 266
AL K+ AC L G +M R K + S+ L + L P+ + L
Sbjct: 436 ALFKMGPACKELHGYYMEKSNA-RRKNRETSM----LGQHEGQLFLGPTAFIAVDFKDLW 490
Query: 267 MLYLIGMMDLTSILIGYLLMIWSHAHSRLP 356
LY + +D T++L Y L+ W H H + P
Sbjct: 491 DLYRVRAID-TNLLKCYFLLTWKHVHCKAP 519
>10_02_0183 + 6365523-6366245
Length = 240
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 338 RTLSPADEELYAKFEAKFDRSIEALWDQNTPDDE 439
R L+P DEELY A+ DR + D++ + E
Sbjct: 62 RWLNPVDEELYNAHSARRDRFTRRIMDEHARELE 95
>07_01_1153 - 10842259-10842390,10843348-10845315
Length = 699
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 26 GKERRNSYHGQRRNRKRSNGHNRSFESKDSLPEWVTYE 139
G SY+ + K N HN S S++++ WV Y+
Sbjct: 166 GLRSEQSYYAGYYDDKDGNFHNLSLISREAMQVWVDYD 203
>05_01_0608 +
5429901-5429982,5430610-5431058,5436758-5437183,
5437270-5437643,5437655-5438113,5438191-5438361,
5438442-5438760
Length = 759
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 228 PSLMTSATTNHLIMLYLIGMMDLTSILIGYLLMIWSHAHSRLP 356
P+ + +L LY + +D T++L Y L+ W H H + P
Sbjct: 567 PTAFIAVDFKYLRDLYRVRAID-TNLLKCYSLLTWKHVHRKAP 608
>10_07_0024 -
11964126-11964542,11965235-11966176,11966245-11966291,
11966545-11966602,11968378-11968624,11970207-11970390,
11970410-11970548,11970689-11970796
Length = 713
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 327 IWSHAHSRLPMR 362
IW H HSR+PMR
Sbjct: 263 IWQHIHSRMPMR 274
>08_01_1064 +
10841095-10842326,10842412-10842663,10842942-10843020,
10843274-10843459
Length = 582
Score = 27.5 bits (58), Expect = 6.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 116 LPEWVTYEGVWDME 157
LP+W YEG W+M+
Sbjct: 340 LPDWALYEGPWEMK 353
>05_01_0574 + 5092209-5092963,5103988-5104654
Length = 473
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 116 LPEWVTYEGVWDMETQDPVKEFIRAIALDEGYGTCENTI 232
+P+ VT +W + T DP++E R L G TC N I
Sbjct: 175 VPQRVTV-CIWRLATGDPLREVSRRFGL--GISTCHNII 210
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +2
Query: 26 GKERRNSYHGQRRNRKRSNGHNRSFESKDSLPEWV 130
G+E + GQRR R +GH + + P ++
Sbjct: 199 GQEHHGGFDGQRRGGGRRDGHGPGHQQRGHHPSYI 233
>10_02_0126 -
5543658-5543670,5543748-5543840,5544344-5544529,
5544613-5545310,5545323-5546237,5546842-5547081
Length = 714
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 107 KDSLPEWVTYEGVWDME 157
K LPEW EG W+ME
Sbjct: 544 KALLPEWALNEGPWEME 560
>09_02_0108 -
4358051-4358645,4358722-4359137,4360307-4360903,
4361068-4361139,4361236-4361370,4361485-4361585,
4362719-4362863
Length = 686
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/85 (22%), Positives = 37/85 (43%)
Frame = +3
Query: 18 SLWEKNDATLTTDKEETERGATVTIALLKVRTACLSGLHMRVFGIWRPKIQSKSLFVP*L 197
S++E + + ++ +R V + + C+ + +WR K +++ LFVP
Sbjct: 445 SIFEVYKSEIHALQDFRKRKYIVVVDTIAEEYECICSRFKKDGILWRLKDKNQELFVPNT 504
Query: 198 LMRDMALVKTPSLMTSATTNHLIML 272
LM L P L + + +I L
Sbjct: 505 LMPAAVLESNPLLRFNILSQKMIKL 529
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/30 (26%), Positives = 22/30 (73%)
Frame = -2
Query: 280 IRYSIIKWFVVADVISDGVFTSAISLIKSY 191
+ Y++++W ++A ++++GVF+ IS ++
Sbjct: 23 LAYALLEWILIALLLANGVFSYLISRFAAF 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,774,596
Number of Sequences: 37544
Number of extensions: 274610
Number of successful extensions: 1071
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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