Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302B08f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5) 32 0.25
SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43) 31 0.58
SB_22670| Best HMM Match : Pkinase (HMM E-Value=0) 30 1.3
SB_48158| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24) 28 4.1
SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0) 28 5.4
SB_43974| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0) 27 7.1
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 27 7.1
SB_56853| Best HMM Match : BTB (HMM E-Value=1.1e-16) 27 9.4
SB_45244| Best HMM Match : Protamine_P2 (HMM E-Value=4.5) 27 9.4
SB_11968| Best HMM Match : zf-TRAF (HMM E-Value=0.32) 27 9.4
>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
Length = 442
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 77 SNGHNRSFESKDS--LPEWVTYEGVWDMETQDPVKEFIRAIALDEGYGTCENTITD 238
S+G NR F + S L E +T E WD+E +DP+++ + + G + +TD
Sbjct: 274 SDGLNRFFSTPRSSKLDEEITNEVKWDVEMEDPLRDISNSKLENGRLGATSSDMTD 329
>SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43)
Length = 1602
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -2
Query: 379 ELGVKLLIGRRECAWLQIISKYPISIEVKSIIPIRYSIIKWFVVADVISDGVFTSAISLI 200
++ VK+ R EC+W + ++ + +R+ I F+ AD +G +T + LI
Sbjct: 237 DVAVKIFSSREECSWFR-------EAQIYQTVMLRHENILGFIAADNKDNGAWTQ-LWLI 288
Query: 199 KSYGTN-KLFDWI 164
Y N L+D++
Sbjct: 289 TDYHANGSLYDYL 301
>SB_22670| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 662
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/74 (20%), Positives = 35/74 (47%)
Frame = -2
Query: 379 ELGVKLLIGRRECAWLQIISKYPISIEVKSIIPIRYSIIKWFVVADVISDGVFTSAISLI 200
++ VK+ + E +W++ E+ + +R+ I F+ +D+I G T ++
Sbjct: 394 DVAVKIFLSHCEKSWMR-------ETEIYQTVLLRHESILGFIASDIIGSGQVTQMYLIM 446
Query: 199 KSYGTNKLFDWILG 158
+ L+D++ G
Sbjct: 447 DYHPLGSLYDFLRG 460
>SB_48158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -2
Query: 385 RFELGVKLLIGRRECAWLQIISKYPI-----SIEVKSIIPIRYSIIKWFVVADVISDGVF 221
R +L V L +G E AWL+ KY + E + + + I++ + DVI G F
Sbjct: 21 RLQLCVILFVGWMERAWLEAQGKYAANGRCNNYEEDILEELEFEILRLSLKGDVIIQGDF 80
Query: 220 TSAISLIKSY 191
+ +++ +
Sbjct: 81 NARTGILQEF 90
>SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 512 FSSRVAVSRMGKKGGRESRSVGPGIHHLECFDPREPQCCDQTSLRTWR 369
F + V + + GGR+ + +EC+DP+ QC TS+ T R
Sbjct: 322 FGAAVLGNNLYIVGGRDGLKT---LSTVECYDPKTMQCMSVTSMNTHR 366
>SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24)
Length = 316
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 98 FESKDSLPEWVTY--EGVWDMETQDPVKEFIRA 190
F+S+ E++ +GVWD+ T D V F+R+
Sbjct: 112 FQSRSDQDEFIVLACDGVWDVMTNDEVGAFVRS 144
>SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = -1
Query: 347 RVCVAPDHQQVPNQYRGQVHHPNQVQHYQVVCCCGCHQ*WCFHKCHIPHQELWHE*TL*L 168
R+C +H++ P R HH ++ Q++ F C +P Q LW + L
Sbjct: 101 RICFDLNHERAPKHERHAQHHQFHRENLQIIKTLATIV-ILFAVCLLPGQVLW----MLL 155
Query: 167 DLGSPYPKHPHM 132
D GS K M
Sbjct: 156 DFGSKDEKSLQM 167
>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1805
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 255 LLLRMSSVMVFSQVPYPSSRAMARINSLTGSWVSISQ 145
L+ R ++ S Y S R + +INSL+ W S+ Q
Sbjct: 1222 LITRRGDLLANSTDQYESERILKQINSLSTLWQSVCQ 1258
>SB_43974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -2
Query: 337 WLQIISKYPISIEVKSIIPIRYSIIKWFVVADVISDGVFTSAISLIKSYGTNKLFDW 167
W+ II+ ++ + +I +S + W +A V++ T A+S+I YG + F W
Sbjct: 737 WMVIIA----AVGLPTIFFKHFSQVAWISLASVVA---LTIAVSIILGYGFSISFSW 786
>SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 625
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -1
Query: 443 GIHHL---ECFDPREPQCCDQTSLRTWRK 366
GI HL ECFDP D +RT+R+
Sbjct: 337 GIQHLNSVECFDPENNTWTDVAPMRTYRR 365
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 308 QYRGQVHHPNQVQHYQVVCCCGCHQ*WCFHKCH 210
++R Q H +H+ CC CH +C+++ H
Sbjct: 6 RHRHQNRHNRCYRHHHY--CCYCHHRYCYYRHH 36
>SB_56853| Best HMM Match : BTB (HMM E-Value=1.1e-16)
Length = 605
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 198 LMRDMALVKTPSLMTSATTNHLIMLYLIGMMDLTSILIGYL 320
+ R MAL++ P + S N ++ + D+T I++GY+
Sbjct: 397 VQRLMALIRFPLMKQSEFINQVVPSGFLSPDDVTQIMLGYV 437
>SB_45244| Best HMM Match : Protamine_P2 (HMM E-Value=4.5)
Length = 82
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 8 RNKKFVGKERRNSYHGQRRNRKRSNGHNRSFESK 109
RN+K +RN ++RNRKR+ NRS + K
Sbjct: 46 RNRK--RNRKRNRKRKRKRNRKRNRKRNRSRQRK 77
>SB_11968| Best HMM Match : zf-TRAF (HMM E-Value=0.32)
Length = 144
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 305 YRGQVHHPNQVQHYQVVCCCGCHQ*WCFHK 216
+RGQ + Q YQVVCC GC + + H+
Sbjct: 90 HRGQAAQILECQ-YQVVCCPGCERQYKRHE 118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,748,930
Number of Sequences: 59808
Number of extensions: 325147
Number of successful extensions: 991
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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