Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF026208-2|AAB71269.3|  774|Caenorhabditis elegans Prion-like-(q...    27   6.2  
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U40414-3|AAA81406.1|  321|Caenorhabditis elegans Hypothetical
           protein F53B3.6 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 320 QVPNQYRGQVHHPNQVQHYQVVCCC 246
           Q P  Y   +     VQH++V CCC
Sbjct: 274 QQPQVYHQDMRPVRPVQHHRVQCCC 298


>AF026208-2|AAB71269.3|  774|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 40
           protein.
          Length = 774

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 326 HQQVPNQYRGQVHHPNQVQH 267
           HQQ P Q   Q H PNQ  H
Sbjct: 536 HQQTPQQQVQQPHQPNQQPH 555


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
            protein F52C12.4 protein.
          Length = 1635

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 500  VAVSRMGKKGGRESRSVGPGIHHLECFDPREPQCCDQTSLRTW 372
            V V R  ++ G E  +V  GI+H    D   P    Q +++ W
Sbjct: 1011 VKVMRAMQRAGLEQNAVTYGIYHRAVMDATWPSPARQKAIKMW 1053


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,454,319
Number of Sequences: 27780
Number of extensions: 231028
Number of successful extensions: 814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)