Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   0.36 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   0.82 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   0.82 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 57  KEETERGATVTIALLKVRTA 116
           K E ERG T+ IAL K  TA
Sbjct: 64  KAERERGITIDIALWKFETA 83


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 57  KEETERGATVTIALLKVRTA 116
           K E ERG T+ IAL K  T+
Sbjct: 7   KAERERGITIDIALWKFETS 26


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 57  KEETERGATVTIALLKVRTA 116
           K E ERG T+ IAL K  T+
Sbjct: 64  KAERERGITIDIALWKFETS 83


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 11  NKKFVGKERRNSYHGQRRNRKRSNGHNRSFESKDS 115
           N++   ++  N  +G R+N  + NG NR  ++K +
Sbjct: 458 NRQNDNRQNDNKQNGNRQNDNKQNG-NRQNDNKQN 491



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 11  NKKFVGKERRNSYHGQRRNRKRSNGHNRS 97
           NK+   ++  N  +G R+N  + NG+ ++
Sbjct: 468 NKQNGNRQNDNKQNGNRQNDNKQNGNRQN 496



 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 11  NKKFVGKERRNSYHGQRRNRKRSNGHNRS 97
           N++   K+  N  +G R+N  + NG+ ++
Sbjct: 493 NRQNGNKQNDNKQNGNRQNDNKRNGNRQN 521


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 250 VADVISDGVFTSAISLIKSYGTNKLFDWILGL 155
           V D++  G+   A     S+GT+KL +  +G+
Sbjct: 69  VVDIVLGGLTYWAFGFAMSFGTDKLNNPFIGM 100


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 12  IRSLWEKNDATLTTDKEETERGATV 86
           + + W K+D  L+   + T RGA +
Sbjct: 448 LNTFWTKSDVDLSRGLDFTPRGAVL 472


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 385 RFELGVKLLIGRRECAWLQIISKYPISIEVKSIIPIRYSIIKWFVV 248
           RF  G++ +IG   C W +I   + I+     +    ++IIK+  V
Sbjct: 474 RFYDGIRDMIGYYPCCWWKIC--WTITTPAICVGVFTFNIIKFVPV 517


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 385 RFELGVKLLIGRRECAWLQIISKYPISIEVKSIIPIRYSIIKWFVV 248
           RF  G++ +IG   C W +I   + I+     +    ++IIK+  V
Sbjct: 527 RFYDGIRDMIGYYPCCWWKIC--WTITTPAICVGVFTFNIIKFVPV 570


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,578
Number of Sequences: 438
Number of extensions: 2977
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)