Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16700.1 68418.m01955 glycosyl hydrolase family 5 protein / c...    30   0.82 
At3g50440.1 68416.m05517 hydrolase, alpha/beta fold family prote...    30   0.82 
At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein ...    29   1.4  
At1g36990.1 68414.m04611 expressed protein contains PS00070: Ald...    29   1.4  
At2g39960.1 68415.m04910 microsomal signal peptidase 25 kDa subu...    29   2.5  
At4g19580.1 68417.m02878 DNAJ heat shock N-terminal domain-conta...    28   4.4  
At3g06510.1 68416.m00755 glycosyl hydrolase family 1 protein sim...    27   5.8  
At1g60420.1 68414.m06802 DC1 domain-containing protein contains ...    27   7.7  
At1g48370.1 68414.m05403 oligopeptide transporter OPT family pro...    27   7.7  

>At5g16700.1 68418.m01955 glycosyl hydrolase family 5 protein /
           cellulase family protein cellulase (EC 3.2.1.4)
           precursor - Xanthomonas campestris pv. campestris,
           PIR:JH0158
          Length = 488

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 13/61 (21%), Positives = 34/61 (55%)
 Frame = -2

Query: 325 ISKYPISIEVKSIIPIRYSIIKWFVVADVISDGVFTSAISLIKSYGTNKLFDWILGLHIP 146
           +SK P+    K I+ + ++ ++     D++++      +++ +S+ + KLF+ +LG+   
Sbjct: 60  LSKQPLDSISKKIVSMGFNCVRLTWPLDLVTNDTLALKVTVKQSFESLKLFEDVLGIQTH 119

Query: 145 N 143
           N
Sbjct: 120 N 120


>At3g50440.1 68416.m05517 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 275

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 308 QYRGQVHHPNQVQ-HYQVVCCCGCHQ*WCFHK 216
           QY+ Q HH  Q Q H+ V     CH  WC+ K
Sbjct: 6   QYQMQTHHMQQQQLHHFVFVHGSCHGAWCWFK 37


>At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 288

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +2

Query: 65  NRKRSNGHNRSFES----KDSLPEWVTYEGVWDMETQDPVKEFIRAIALDEGYGTCENT 229
           N K   GH RS  S    ++  P  ++YE   D+ + DP   F  ++ L++G    E++
Sbjct: 15  NGKALGGHMRSHMSNSHEEEQRPSQLSYETESDVSSSDPKFAFTSSVLLEDGESESESS 73


>At1g36990.1 68414.m04611 expressed protein contains PS00070:
           Aldehyde dehydrogenases cysteine active site; similar to
           high molecular mass nuclear antigen (GI:2754696) [Gallus
           gallus];similar to streptococcal hemagglutinin
           (GI:8885520) [Streptococcus gordonii] similar to
           proteophosphoglycan (GI:5420389) [Leishmania major]
          Length = 581

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 35  RRNSYHGQRRNRKRSNGHNRSFESKDSL--PEWVTYEGVWDMETQDPVKEFI 184
           RR S +G  ++   S   NRS   KD     + V+Y   WD++T  P++  +
Sbjct: 73  RRGSSNGSAKHAYSSFNFNRSQRDKDRSRDKDRVSYVDPWDLDTSIPLRTIL 124


>At2g39960.1 68415.m04910 microsomal signal peptidase 25 kDa
           subunit, putative (SPC25) identical to Probable
           microsomal signal peptidase 25 kDa subunit (EC 3.4.-.-)
           (SPase 25 kDa subunit) (SPC25) (Swiss-Prot:P58684)
           [Arabidopsis thaliana]; contains non-consensus AT-AC
           splice sites; contains 1 transmembrane domain;
          Length = 192

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 334 LQIISKYPISIEVKSIIPIRYSIIKWFVVADVISDGVFTSAI-SLIKSY 191
           L I S  P SI     + +  S+ +WF    V+ +G+F   + +LIK+Y
Sbjct: 135 LTIDSADPKSISAGKSVQLTKSVTQWFTKDGVLVEGLFWKDVEALIKNY 183


>At4g19580.1 68417.m02878 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI4
           DnaJ homolog subfamily B member 12 {Mus musculus};
           contains Pfam profile PF00226: DnaJ domain
          Length = 301

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 392 QTSLRTWRKAPHRQARVCVAPDHQQVPNQYR 300
           Q   +T +   H + R CVA DH++ P Q +
Sbjct: 117 QGQTQTQKSQNHTRTRTCVAYDHKRKPKQVK 147


>At3g06510.1 68416.m00755 glycosyl hydrolase family 1 protein
           similar to Beta-galactosidase (SP:P22498) [Sulfolobus
           solfataricus}; almost identical to beta-glucosidase
           GB:AAF23823 GI:6685165 from [Arabidopsis thaliana]
          Length = 622

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 113 SLPEWVTYEGVWDME-TQDPVKEFIRAIALDEGYGTCENTIT 235
           SLP W    G W ME T D   +F R I +D  Y   ++ +T
Sbjct: 224 SLPPWAADYGGWKMEKTVDYFMDFTR-IVVDSMYDLVDSWVT 264


>At1g60420.1 68414.m06802 DC1 domain-containing protein contains
           Pfam domain PF03107: DC1 domain
          Length = 578

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 231 SLMTSATTNHLIMLYLIGMMDLTSILIGYLLMIWSHAHSRLPMRSFTP 374
           SL+ S   N++  L   G   L S L+G  ++++  AH   P R+FTP
Sbjct: 338 SLLVSGDLNYV--LGKDGAKVLVSDLVGKTILMYFSAHWCPPCRAFTP 383


>At1g48370.1 68414.m05403 oligopeptide transporter OPT family
           protein similar to iron-phytosiderophore transporter
           protein yellow stripe 1 [Zea mays] GI:10770865; contains
           Pfam profile PF03169: OPT oligopeptide transporter
           protein
          Length = 724

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -2

Query: 340 AWLQIISKYPISIEVKSIIPIRYSIIKWFVVADVISDGVFTSAISLIKSYGTNKLFDWIL 161
           +W  +     IS    +I+P  +S ++W+ +  +    +F   ++   +YG   L DW L
Sbjct: 425 SWFAVGGYVVISAVSTAILPHMFSQLRWYYIIVIY---IFAPILAFCNAYGAG-LTDWSL 480


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,036,139
Number of Sequences: 28952
Number of extensions: 222357
Number of successful extensions: 795
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)