Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302B07f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g34760.1 68414.m04323 14-3-3 protein GF14 omicron (GRF11) ide... 173 5e-44
At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identi... 167 4e-42
At3g02520.1 68416.m00240 14-3-3 protein GF14 nu (GRF7) identical... 165 2e-41
At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10) ide... 165 2e-41
At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10) ide... 165 2e-41
At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10) ide... 165 2e-41
At5g38480.1 68418.m04651 14-3-3 protein GF14 psi (GRF3) (RCI1) i... 163 6e-41
At5g16050.1 68418.m01876 14-3-3 protein GF14 upsilon (GRF5) iden... 159 1e-39
At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identi... 159 1e-39
At2g42590.1 68415.m05270 14-3-3 protein GF14 mu (GRF9) identical... 159 1e-39
At1g35160.1 68414.m04360 14-3-3 protein GF14 phi (GRF4) identica... 157 6e-39
At5g65430.2 68418.m08229 14-3-3 protein GF14 kappa (GRF8) identi... 154 4e-38
At5g65430.1 68418.m08228 14-3-3 protein GF14 kappa (GRF8) identi... 154 4e-38
At4g09000.1 68417.m01487 14-3-3-like protein GF14 chi / general... 154 4e-38
At5g10450.1 68418.m01211 14-3-3 protein GF14 lambda (GRF6) (AFT1... 151 2e-37
At1g78220.1 68414.m09115 14-3-3 protein GF14 pi (GRF13) similar ... 122 2e-28
At1g22290.1 68414.m02787 14-3-3 protein GF14, putative (GRF10) s... 101 2e-22
At3g58840.1 68416.m06558 expressed protein 39 0.002
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 31 0.62
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela... 31 0.62
At5g65685.1 68418.m08268 soluble glycogen synthase-related conta... 30 0.82
At2g42190.1 68415.m05221 expressed protein ; similar to GP|9826|... 30 0.82
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 29 1.9
At1g10880.1 68414.m01250 expressed protein contains Pfam profile... 29 1.9
At5g42880.1 68418.m05226 hypothetical protein contains Pfam prof... 29 2.5
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide... 29 2.5
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide... 29 2.5
At4g27595.1 68417.m03964 protein transport protein-related low s... 29 2.5
At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.5
At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase fa... 28 4.4
At4g33390.1 68417.m04746 hypothetical protein contains Pfam prof... 28 4.4
At3g63350.1 68416.m07129 heat shock transcription factor family ... 28 4.4
At3g51910.1 68416.m05694 heat shock transcription factor family ... 28 4.4
At2g05590.2 68415.m00595 expressed protein similar to nucleolar ... 28 4.4
At2g05590.1 68415.m00594 expressed protein similar to nucleolar ... 28 4.4
At5g19750.1 68418.m02348 peroxisomal membrane 22 kDa family prot... 27 5.8
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 27 5.8
At3g09650.1 68416.m01144 pentatricopeptide (PPR) repeat-containi... 27 7.7
At2g40090.1 68415.m04927 ABC1 family protein contains Pfam domai... 27 7.7
At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2 tr... 27 7.7
At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2 tr... 27 7.7
At1g18180.1 68414.m02260 expressed protein 27 7.7
>At1g34760.1 68414.m04323 14-3-3 protein GF14 omicron (GRF11)
identical to SP:Q9S9Z8, 14-3-3-like protein GF14 omicron
(General regulatory factor 11){Arabidopsis thaliana}
Length = 255
Score = 173 bits (422), Expect = 5e-44
Identities = 83/135 (61%), Positives = 106/135 (78%), Gaps = 2/135 (1%)
Frame = +1
Query: 118 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 297
M ++ + V AKL EQAERYD+M AMK+V VEL+ EERNLLSV YKNV+GARR+S
Sbjct: 1 MENERAKQVYLAKLNEQAERYDEMVEAMKKVAALDVELTIEERNLLSVGYKNVIGARRAS 60
Query: 298 WRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKV 471
WR++SSIEQK E G+E+ + K+YR KVE+EL +ICYD+L ++DKHL+P A++ ES V
Sbjct: 61 WRILSSIEQKEESKGNEQNAKRIKDYRTKVEEELSKICYDILAVIDKHLVPFATSGESTV 120
Query: 472 FYLKMKGDYYRYLAE 516
FY KMKGDY+RYLAE
Sbjct: 121 FYYKMKGDYFRYLAE 135
>At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identical
to 14-3-3 protein GF14iota GI:12963453 from [Arabidopsis
thaliana]
Length = 268
Score = 167 bits (406), Expect = 4e-42
Identities = 82/140 (58%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
Frame = +1
Query: 103 LPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVG 282
+ SS ++E V AKL+EQAERYD+M MK+V EL+ EERNLLSV YKNV+G
Sbjct: 1 MSSSGSDKERETFVYMAKLSEQAERYDEMVETMKKVARVNSELTVEERNLLSVGYKNVIG 60
Query: 283 ARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASN 456
ARR+SWR++SSIEQK E G+E + K YR KVE EL IC D+L ++D+HLIP A++
Sbjct: 61 ARRASWRIMSSIEQKEESKGNESNVKQIKGYRQKVEDELANICQDILTIIDQHLIPHATS 120
Query: 457 PESKVFYLKMKGDYYRYLAE 516
E+ VFY KMKGDYYRYLAE
Sbjct: 121 GEATVFYYKMKGDYYRYLAE 140
>At3g02520.1 68416.m00240 14-3-3 protein GF14 nu (GRF7) identical to
14-3-3 protein GF14 nu GI:1531631 from [Arabidopsis
thaliana]
Length = 265
Score = 165 bits (401), Expect = 2e-41
Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 4/137 (2%)
Frame = +1
Query: 118 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEERNLLSVAYKNVVGARR 291
MS +EE V AKLAEQAERY++M M++V +T EL+ EERNLLSVAYKNV+GARR
Sbjct: 1 MSSSREENVYLAKLAEQAERYEEMVEFMEKVAKTVDTDELTVEERNLLSVAYKNVIGARR 60
Query: 292 SSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPES 465
+SWR+ISSIEQK E G++ + K+YR K+E EL +IC +L LLD HL+P AS ES
Sbjct: 61 ASWRIISSIEQKEESRGNDDHVSIIKDYRGKIETELSKICDGILNLLDSHLVPTASLAES 120
Query: 466 KVFYLKMKGDYYRYLAE 516
KVFYLKMKGDY+RYLAE
Sbjct: 121 KVFYLKMKGDYHRYLAE 137
>At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10)
identical to 14-3-3 protein GF14 epsilon GI:5802798,
SP:P48347 from [Arabidopsis thaliana]
Length = 251
Score = 165 bits (401), Expect = 2e-41
Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 2/135 (1%)
Frame = +1
Query: 118 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 297
M ++E+ V AKL+EQ ERYD+M AMK+V + VEL+ EERNL+SV YKNV+GARR+S
Sbjct: 1 MENEREKQVYLAKLSEQTERYDEMVEAMKKVAQLDVELTVEERNLVSVGYKNVIGARRAS 60
Query: 298 WRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKV 471
WR++SSIEQK E G++ + K YR +VE EL ++C D+L ++DKHLIP ++ ES V
Sbjct: 61 WRILSSIEQKEESKGNDENVKRLKNYRKRVEDELAKVCNDILSVIDKHLIPSSNAVESTV 120
Query: 472 FYLKMKGDYYRYLAE 516
F+ KMKGDYYRYLAE
Sbjct: 121 FFYKMKGDYYRYLAE 135
>At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10)
identical to 14-3-3 protein GF14 epsilon GI:5802798,
SP:P48347 from [Arabidopsis thaliana]
Length = 254
Score = 165 bits (401), Expect = 2e-41
Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 2/135 (1%)
Frame = +1
Query: 118 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 297
M ++E+ V AKL+EQ ERYD+M AMK+V + VEL+ EERNL+SV YKNV+GARR+S
Sbjct: 1 MENEREKQVYLAKLSEQTERYDEMVEAMKKVAQLDVELTVEERNLVSVGYKNVIGARRAS 60
Query: 298 WRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKV 471
WR++SSIEQK E G++ + K YR +VE EL ++C D+L ++DKHLIP ++ ES V
Sbjct: 61 WRILSSIEQKEESKGNDENVKRLKNYRKRVEDELAKVCNDILSVIDKHLIPSSNAVESTV 120
Query: 472 FYLKMKGDYYRYLAE 516
F+ KMKGDYYRYLAE
Sbjct: 121 FFYKMKGDYYRYLAE 135
>At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10)
identical to 14-3-3 protein GF14 epsilon GI:5802798,
SP:P48347 from [Arabidopsis thaliana]
Length = 254
Score = 165 bits (401), Expect = 2e-41
Identities = 78/135 (57%), Positives = 103/135 (76%), Gaps = 2/135 (1%)
Frame = +1
Query: 118 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 297
M ++E+ V AKL+EQ ERYD+M AMK+V + VEL+ EERNL+SV YKNV+GARR+S
Sbjct: 1 MENEREKQVYLAKLSEQTERYDEMVEAMKKVAQLDVELTVEERNLVSVGYKNVIGARRAS 60
Query: 298 WRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKV 471
WR++SSIEQK E G++ + K YR +VE EL ++C D+L ++DKHLIP ++ ES V
Sbjct: 61 WRILSSIEQKEESKGNDENVKRLKNYRKRVEDELAKVCNDILSVIDKHLIPSSNAVESTV 120
Query: 472 FYLKMKGDYYRYLAE 516
F+ KMKGDYYRYLAE
Sbjct: 121 FFYKMKGDYYRYLAE 135
>At5g38480.1 68418.m04651 14-3-3 protein GF14 psi (GRF3) (RCI1)
identical to 14-3-3 protein GF14 psi GI:1168200,
SP:P42644
Length = 255
Score = 163 bits (396), Expect = 6e-41
Identities = 85/133 (63%), Positives = 103/133 (77%), Gaps = 4/133 (3%)
Frame = +1
Query: 130 KEELVQRAKLAEQAERYDDMAAAMKEVTETG--VELSNEERNLLSVAYKNVVGARRSSWR 303
+EE V AKLAEQAERY++M M++V +T ELS EERNLLSVAYKNV+GARR+SWR
Sbjct: 4 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELSVEERNLLSVAYKNVIGARRASWR 63
Query: 304 VISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFY 477
+ISSIEQK E G+E + K+YR K+E EL +IC +L +L+ HLIP AS ESKVFY
Sbjct: 64 IISSIEQKEESKGNEDHVAIIKDYRGKIESELSKICDGILNVLEAHLIPSASPAESKVFY 123
Query: 478 LKMKGDYYRYLAE 516
LKMKGDY+RYLAE
Sbjct: 124 LKMKGDYHRYLAE 136
>At5g16050.1 68418.m01876 14-3-3 protein GF14 upsilon (GRF5)
identical to 14-3-3 protein GF14 upsilon GI:2232148 from
[Arabidopsis thaliana]
Length = 268
Score = 159 bits (386), Expect = 1e-39
Identities = 83/133 (62%), Positives = 102/133 (76%), Gaps = 4/133 (3%)
Frame = +1
Query: 130 KEELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEERNLLSVAYKNVVGARRSSWR 303
+EE V AKLAEQAERY++M M++V +T EL+ EERNLLSVAYKNV+GARR+SWR
Sbjct: 7 REENVYLAKLAEQAERYEEMVEFMEKVAKTVETEELTVEERNLLSVAYKNVIGARRASWR 66
Query: 304 VISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFY 477
+ISSIEQK + G+ + K+YR K+E EL +IC +L LL+ HLIP AS ESKVFY
Sbjct: 67 IISSIEQKEDSRGNSDHVSIIKDYRGKIETELSKICDGILNLLEAHLIPAASLAESKVFY 126
Query: 478 LKMKGDYYRYLAE 516
LKMKGDY+RYLAE
Sbjct: 127 LKMKGDYHRYLAE 139
>At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identical
to GF14omega isoform GI:487791 from [Arabidopsis
thaliana]
Length = 259
Score = 159 bits (386), Expect = 1e-39
Identities = 83/137 (60%), Positives = 103/137 (75%), Gaps = 4/137 (2%)
Frame = +1
Query: 118 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEERNLLSVAYKNVVGARR 291
M+ +EE V AKLAEQAERY++M M++V+ G EL+ EERNLLSVAYKNV+GARR
Sbjct: 1 MASGREEFVYMAKLAEQAERYEEMVEFMEKVSAAVDGDELTVEERNLLSVAYKNVIGARR 60
Query: 292 SSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPES 465
+SWR+ISSIEQK E G++ +EYR K+E EL IC +L LLD LIP A++ +S
Sbjct: 61 ASWRIISSIEQKEESRGNDDHVTAIREYRSKIETELSGICDGILKLLDSRLIPAAASGDS 120
Query: 466 KVFYLKMKGDYYRYLAE 516
KVFYLKMKGDY+RYLAE
Sbjct: 121 KVFYLKMKGDYHRYLAE 137
>At2g42590.1 68415.m05270 14-3-3 protein GF14 mu (GRF9) identical to
GF14 mu GI:3551052, SP:Q96299 from [Arabidopsis
thaliana]
Length = 263
Score = 159 bits (385), Expect = 1e-39
Identities = 76/132 (57%), Positives = 99/132 (75%), Gaps = 2/132 (1%)
Frame = +1
Query: 127 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 306
+++ V AKL+EQAERY++M +MK V + V+L+ EERNLLSV YKNV+G+RR+SWR+
Sbjct: 6 ERDTFVYLAKLSEQAERYEEMVESMKSVAKLNVDLTVEERNLLSVGYKNVIGSRRASWRI 65
Query: 307 ISSIEQK--TEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYL 480
SSIEQK +G++ + KEY KVE EL IC D++ +LD+HLIP AS ES VF+
Sbjct: 66 FSSIEQKEAVKGNDVNVKRIKEYMEKVELELSNICIDIMSVLDEHLIPSASEGESTVFFN 125
Query: 481 KMKGDYYRYLAE 516
KMKGDYYRYLAE
Sbjct: 126 KMKGDYYRYLAE 137
>At1g35160.1 68414.m04360 14-3-3 protein GF14 phi (GRF4) identical
to GF14 protein phi chain GI:1493805, SP:P46077 from
[Arabidopsis thaliana]
Length = 267
Score = 157 bits (380), Expect = 6e-39
Identities = 80/133 (60%), Positives = 101/133 (75%), Gaps = 4/133 (3%)
Frame = +1
Query: 130 KEELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEERNLLSVAYKNVVGARRSSWR 303
+EE V AKLAEQAERY++M M++V E EL+ EERNLLSVAYKNV+GARR+SWR
Sbjct: 11 REEFVYLAKLAEQAERYEEMVEFMEKVAEAVDKDELTVEERNLLSVAYKNVIGARRASWR 70
Query: 304 VISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFY 477
+ISSIEQK E G++ ++YR K+E EL +IC +L LLD L+P ++N +SKVFY
Sbjct: 71 IISSIEQKEESRGNDDHVTTIRDYRSKIESELSKICDGILKLLDTRLVPASANGDSKVFY 130
Query: 478 LKMKGDYYRYLAE 516
LKMKGDY+RYLAE
Sbjct: 131 LKMKGDYHRYLAE 143
>At5g65430.2 68418.m08229 14-3-3 protein GF14 kappa (GRF8) identical
to 14-3-3 protein GF14 kappa GI:5802794, SP:P48348 from
[Arabidopsis thaliana]
Length = 246
Score = 154 bits (373), Expect = 4e-38
Identities = 76/137 (55%), Positives = 102/137 (74%), Gaps = 5/137 (3%)
Frame = +1
Query: 121 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGV---ELSNEERNLLSVAYKNVVGARR 291
++ +++ V AKLAEQAERY++M M+++ EL+ EERNLLSVAYKNV+G+ R
Sbjct: 4 TLSRDQYVYMAKLAEQAERYEEMVQFMEQLVSGATPAGELTVEERNLLSVAYKNVIGSLR 63
Query: 292 SSWRVISSIEQKTEGSERKQQMA--KEYRVKVEKELREICYDVLGLLDKHLIPKASNPES 465
++WR++SSIEQK E + ++ ++ K+YR KVE EL IC +L LLD HLIP A+ ES
Sbjct: 64 AAWRIVSSIEQKEESRKNEEHVSLVKDYRSKVETELSSICSGILRLLDSHLIPSATASES 123
Query: 466 KVFYLKMKGDYYRYLAE 516
KVFYLKMKGDY+RYLAE
Sbjct: 124 KVFYLKMKGDYHRYLAE 140
>At5g65430.1 68418.m08228 14-3-3 protein GF14 kappa (GRF8) identical
to 14-3-3 protein GF14 kappa GI:5802794, SP:P48348 from
[Arabidopsis thaliana]
Length = 248
Score = 154 bits (373), Expect = 4e-38
Identities = 76/137 (55%), Positives = 102/137 (74%), Gaps = 5/137 (3%)
Frame = +1
Query: 121 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGV---ELSNEERNLLSVAYKNVVGARR 291
++ +++ V AKLAEQAERY++M M+++ EL+ EERNLLSVAYKNV+G+ R
Sbjct: 4 TLSRDQYVYMAKLAEQAERYEEMVQFMEQLVSGATPAGELTVEERNLLSVAYKNVIGSLR 63
Query: 292 SSWRVISSIEQKTEGSERKQQMA--KEYRVKVEKELREICYDVLGLLDKHLIPKASNPES 465
++WR++SSIEQK E + ++ ++ K+YR KVE EL IC +L LLD HLIP A+ ES
Sbjct: 64 AAWRIVSSIEQKEESRKNEEHVSLVKDYRSKVETELSSICSGILRLLDSHLIPSATASES 123
Query: 466 KVFYLKMKGDYYRYLAE 516
KVFYLKMKGDY+RYLAE
Sbjct: 124 KVFYLKMKGDYHRYLAE 140
>At4g09000.1 68417.m01487 14-3-3-like protein GF14 chi / general
regulatory factor 1 (GRF1) identical to 14-3-3 protein
GF14 chi chain GI:1702986, SP:P42643 from [Arabidopsis
thaliana]
Length = 267
Score = 154 bits (373), Expect = 4e-38
Identities = 78/133 (58%), Positives = 102/133 (76%), Gaps = 4/133 (3%)
Frame = +1
Query: 130 KEELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEERNLLSVAYKNVVGARRSSWR 303
++E V AKLAEQAERY++M M++V + EL+ EERNLLSVAYKNV+GARR+SWR
Sbjct: 10 RDEFVYMAKLAEQAERYEEMVEFMEKVAKAVDKDELTVEERNLLSVAYKNVIGARRASWR 69
Query: 304 VISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFY 477
+ISSIEQK E G++ + ++YR K+E EL +IC +L LLD L+P A++ +SKVFY
Sbjct: 70 IISSIEQKEESRGNDDHVSLIRDYRSKIETELSDICDGILKLLDTILVPAAASGDSKVFY 129
Query: 478 LKMKGDYYRYLAE 516
LKMKGDY+RYLAE
Sbjct: 130 LKMKGDYHRYLAE 142
>At5g10450.1 68418.m01211 14-3-3 protein GF14 lambda (GRF6) (AFT1)
identical to 14-3-3 GF14lambda GI:1345595 from
[Arabidopsis thaliana]
Length = 248
Score = 151 bits (367), Expect = 2e-37
Identities = 76/138 (55%), Positives = 102/138 (73%), Gaps = 6/138 (4%)
Frame = +1
Query: 121 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGV----ELSNEERNLLSVAYKNVVGAR 288
++ +++ V AKLAEQAERY++M M+++ TG EL+ EERNLLSVAYKNV+G+
Sbjct: 4 TLGRDQYVYMAKLAEQAERYEEMVQFMEQLV-TGATPAEELTVEERNLLSVAYKNVIGSL 62
Query: 289 RSSWRVISSIEQKTEGSERKQQMA--KEYRVKVEKELREICYDVLGLLDKHLIPKASNPE 462
R++WR++SSIEQK E + + ++ K+YR KVE EL +C +L LLD HLIP A E
Sbjct: 63 RAAWRIVSSIEQKEESRKNDEHVSLVKDYRSKVESELSSVCSGILKLLDSHLIPSAGASE 122
Query: 463 SKVFYLKMKGDYYRYLAE 516
SKVFYLKMKGDY+RY+AE
Sbjct: 123 SKVFYLKMKGDYHRYMAE 140
>At1g78220.1 68414.m09115 14-3-3 protein GF14 pi (GRF13) similar to
GF14 epsilon isoform GI:1022778 from [Arabidopsis
thaliana]; contains Pfam profile: PF00244 14-3-3
proteins
Length = 245
Score = 122 bits (293), Expect = 2e-28
Identities = 62/136 (45%), Positives = 94/136 (69%), Gaps = 3/136 (2%)
Frame = +1
Query: 118 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 297
M ++E+L+ AKL QA RYDD+ +M++V E +ELS EER+LL+ YKNV+ A+R S
Sbjct: 1 MENEREKLIYLAKLGCQAGRYDDVMKSMRKVCELDIELSEEERDLLTTGYKNVMEAKRVS 60
Query: 298 WRVISSIE--QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK-ASNPESK 468
RVISSIE + ++G+++ ++ K + V+ E +C D+L L+D HLIP +N ES
Sbjct: 61 LRVISSIEKMEDSKGNDQNVKLIKGQQEMVKYEFFNVCNDILSLIDSHLIPSTTTNVESI 120
Query: 469 VFYLKMKGDYYRYLAE 516
V + ++KGDY+RY+AE
Sbjct: 121 VLFNRVKGDYFRYMAE 136
>At1g22290.1 68414.m02787 14-3-3 protein GF14, putative (GRF10)
similar to 14-3-3 protein GF14 epsilon GI:5802798 from
[Arabidopsis thaliana]
Length = 196
Score = 101 bits (243), Expect = 2e-22
Identities = 55/133 (41%), Positives = 82/133 (61%), Gaps = 6/133 (4%)
Frame = +1
Query: 118 MSVDKEELVQRAKLAEQAERY----DDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGA 285
M ++ V A L+ +ERY +++ AMK+ + ELS +ERNL+SV YKNV+ A
Sbjct: 1 MENEQSTHVHFASLSSSSERYNETFEEIKKAMKKSVQLKAELSAKERNLVSVGYKNVISA 60
Query: 286 RRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNP 459
RR+S ++SSI QK E G+E + K YR KVE EL +IC D+L +++K LIP ++
Sbjct: 61 RRASLEILSSIVQKEESKGNEENVKKLKNYRNKVEDELAKICNDILSVINKQLIPSSTTV 120
Query: 460 ESKVFYLKMKGDY 498
+S V + M D+
Sbjct: 121 DSSVLFYNMLADF 133
>At3g58840.1 68416.m06558 expressed protein
Length = 318
Score = 38.7 bits (86), Expect = 0.002
Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Frame = +1
Query: 136 ELVQR-AKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV-- 306
E+ QR ++ ++ E Y++ A++ ++ VEL E NL ++ G +++ V
Sbjct: 66 EMNQRFGEMEKEIEEYEEEKKALEAISTRAVELETEVSNLHDDLITSLNGVDKTAEEVAE 125
Query: 307 ----ISSIEQKTEGSERKQQMAKEYRVKVEKELREI 402
++ I +K EG E++ + ++ R +VEK +R++
Sbjct: 126 LKKALAEIVEKLEGCEKEAEGLRKDRAEVEKRVRDL 161
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 30.7 bits (66), Expect = 0.62
Identities = 22/103 (21%), Positives = 47/103 (45%)
Frame = +1
Query: 94 ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 273
++S+ + V+ + +KLAE + ++ +KEV ET + +ER + ++
Sbjct: 195 VASVNGRSSDVENKIYSAESKLAEATRKSSELKLRLKEV-ETRESVLQQERLSFTKERES 253
Query: 274 VVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREI 402
G + ++ E+K +G E K + E+++ EI
Sbjct: 254 YEGTFQKQREYLNEWEKKLQGKEESITEQKRNLNQREEKVNEI 296
>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 391
Score = 30.7 bits (66), Expect = 0.62
Identities = 22/103 (21%), Positives = 47/103 (45%)
Frame = +1
Query: 94 ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 273
++S+ + V+ + +KLAE + ++ +KEV ET + +ER + ++
Sbjct: 208 VASVNGRSSDVENKIYSAESKLAEATRKSSELKLRLKEV-ETRESVLQQERLSFTKERES 266
Query: 274 VVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREI 402
G + ++ E+K +G E K + E+++ EI
Sbjct: 267 YEGTFQKQREYLNEWEKKLQGKEESITEQKRNLNQREEKVNEI 309
>At5g65685.1 68418.m08268 soluble glycogen synthase-related contains
weak similarity to Soluble glycogen synthase,
chloroplast precursor (EC 2.4.1.11) (SS III)
(Swiss-Prot:Q43846) [Solanum tuberosum]
Length = 460
Score = 30.3 bits (65), Expect = 0.82
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = +1
Query: 160 AEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQ----K 327
+E E +D+ ++ + + T + NL A KN++ + + +EQ K
Sbjct: 40 SEGHEEFDNSQKSLGQSSITKEAKHKDIWNLFREAQKNIMILNKQRLAAVDELEQLKKDK 99
Query: 328 TEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPE 462
E ER Q+ E ++ ++K+ + +++L +D +I N E
Sbjct: 100 EELLERINQLEAESQIVIKKDKSSLFWELLLRIDSMVINGLVNIE 144
>At2g42190.1 68415.m05221 expressed protein ; similar to
GP|9826|X07453
Length = 141
Score = 30.3 bits (65), Expect = 0.82
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +1
Query: 127 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS--W 300
D EE+V++ ++ ++ E DD + K++ E ++SN L+ +N +G++ ++
Sbjct: 51 DDEEMVEKMEVEDEDEEIDDGSVTSKDLKERKRKMSNGSNTDLT-EEENGLGSKPNTDDS 109
Query: 301 RVISSIEQKTEGSERKQQMAKEYRVKVE 384
+SI + GS RK + + VE
Sbjct: 110 TRSTSIGFRQNGSRRKSKPRRAAEAVVE 137
>At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC)
family protein similar to SMC1 protein [Bos taurus]
GI:4235253, 14S cohesin SMC1 subunit (SMC protein)
[Xenopus laevis] GI:3328231; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 29.1 bits (62), Expect = 1.9
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 187 MAAAMKEVTETGVELSNEERNL---LSVAYKNVVGAR-RSSWRVISSIEQKTEGSERKQQ 354
+ A KE E +ELSN+ L L VG+R R ISS+E EG ++
Sbjct: 823 LKTAEKEAEER-LELSNQLAKLKYQLEYEQNRDVGSRIRKIESSISSLETDLEGIQKTMS 881
Query: 355 MAKEYRVKVEKEL 393
KE VK+ E+
Sbjct: 882 ERKETAVKITNEI 894
>At1g10880.1 68414.m01250 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 651
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +1
Query: 256 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICY 408
+V + ++VG++R+ + SIE+ + QQ ++++KE+RE Y
Sbjct: 371 NVGHHDIVGSKRNQYHYAKSIEENENMVKEMQQQ----MLQIDKEIREKTY 417
>At5g42880.1 68418.m05226 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 751
Score = 28.7 bits (61), Expect = 2.5
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 13/88 (14%)
Frame = +1
Query: 133 EELVQRAKLAEQAERYDD----MAAAMKEVTETGVELSNEERNLLSV-------AYKNVV 279
EELV+ AK EQA + + +A A ++ ELS + + +S A K +
Sbjct: 481 EELVETAKKLEQATKEAEDAKALATASRDELRMAKELSEQAKRGMSTIESRLVEAKKEME 540
Query: 280 GARRSSWRVISSIE--QKTEGSERKQQM 357
AR S +++I+ Q+TE S+R +++
Sbjct: 541 AARASEKLALAAIKALQETESSQRFEEI 568
>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 810
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 316 IEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIP-KASNPESKVFYLKM 486
+EQ+ E K + + R + +KE + Y+ L L K + K ++P S VF +++
Sbjct: 746 LEQREREEEEKVSLLQLCRGRTQKESARLFYETLVLKTKGYVEVKQNHPYSDVFLMRV 803
>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 809
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 316 IEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIP-KASNPESKVFYLKM 486
+EQ+ E K + + R + +KE + Y+ L L K + K ++P S VF +++
Sbjct: 745 LEQREREEEEKVSLLQLCRGRTQKESARLFYETLVLKTKGYVEVKQNHPYSDVFLMRV 802
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 28.7 bits (61), Expect = 2.5
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Frame = +1
Query: 97 SSLPSSTMSVD--KEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYK 270
+ L SS V+ KE + K E+ ++ + +T V+ NEE AY+
Sbjct: 737 TKLQSSIQEVEVLKEREAENIKQIEELSLSNERLVEKEAKLQTVVQ-ENEELREKESAYQ 795
Query: 271 NVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDK 432
+ + + E K + S ++ + +E V K++ E+ LLDK
Sbjct: 796 KKIEELSKVDEIFADREAKLQSSTQENEELREREVAYLKKIEELAKLQENLLDK 849
>At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose:salicylic acid
glucosyltransferase [Nicotiana tabacum] GI:7385017;
contains Pfam profiles PF00201: UDP-glucoronosyl and
UDP-glucosyl transferase, PF01535: PPR repeat
Length = 1184
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +2
Query: 17 AREKLILCLNLLVQIHFSPSDKGISELVLFHRPRCPS 127
A+++++L + + V+I+ + S K +V+F+R CPS
Sbjct: 420 AQKRIVLFVKMTVRIYDAVSTKIPKSIVVFNRTPCPS 456
>At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase
family protein contains similarity to inositol
polyphosphate 5-phosphatase I (GI:10444261) and II
(GI:10444263) [Arabidopsis thaliana]; contains Pfam
profile PF03372: Endonuclease/Exonuclease/phosphatase
family
Length = 437
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 182 SYRSACSANLARCTSSSLSTDIVDD-GRELIH*CP 81
S+R+ C L C S+ S DIV GRE CP
Sbjct: 113 SFRTECRRKLKICNCSTFSEDIVRKYGRESCFRCP 147
>At4g33390.1 68417.m04746 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 779
Score = 27.9 bits (59), Expect = 4.4
Identities = 26/95 (27%), Positives = 44/95 (46%)
Frame = +1
Query: 115 TMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRS 294
T+++ EE + +K A +AE + A V+E G E+R+L + N R
Sbjct: 628 TVTLTIEEYYELSKRAHEAEEAANARVAAA-VSEVGEAKETEKRSLEKLEEVNKEMVERK 686
Query: 295 SWRVISSIEQKTEGSERKQQMAKEYRVKVEKELRE 399
+ G+ K + AKE ++ VE+ELR+
Sbjct: 687 A---------TLAGAMEKAEKAKEGKLGVEQELRK 712
>At3g63350.1 68416.m07129 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 282
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 205 EVTETGVELSN--EERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQ 354
E + GVEL EER++L + + + + + ++EQ+ G+E+KQ+
Sbjct: 135 EAHDPGVELPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGAEKKQR 186
>At3g51910.1 68416.m05694 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 272
Score = 27.9 bits (59), Expect = 4.4
Identities = 22/114 (19%), Positives = 53/114 (46%)
Frame = +1
Query: 127 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 306
++E L+ + +L + +R + + + EL E+ +L + ++ ++++
Sbjct: 102 NEEFLLGQRQLLKNIKRRNPFTPSSSPSHDACNEL-RREKQVLMMEIVSLRQQQQTTKSY 160
Query: 307 ISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESK 468
I ++EQ+ EG+ERKQ+ + + + + +L DK + N +K
Sbjct: 161 IKAMEQRIEGTERKQRQMMSFLARA-MQSPSFLHQLLKQRDKKIKELEDNESAK 213
>At2g05590.2 68415.m00595 expressed protein similar to nucleolar
protein C7C (GI:13540302) [Rattus norvegicus]
Length = 303
Score = 27.9 bits (59), Expect = 4.4
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 127 DKE-ELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWR 303
DK+ EL AK+ E Y D M+E+TE+ V ++ L + N+V R W
Sbjct: 100 DKDCELRVSAKVEESGNDYFDGVKKMRELTESSVFITANLFEFLHASLPNIV--RGCKWI 157
Query: 304 VISS 315
++ S
Sbjct: 158 LLYS 161
>At2g05590.1 68415.m00594 expressed protein similar to nucleolar
protein C7C (GI:13540302) [Rattus norvegicus]
Length = 263
Score = 27.9 bits (59), Expect = 4.4
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 127 DKE-ELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWR 303
DK+ EL AK+ E Y D M+E+TE+ V ++ L + N+V R W
Sbjct: 100 DKDCELRVSAKVEESGNDYFDGVKKMRELTESSVFITANLFEFLHASLPNIV--RGCKWI 157
Query: 304 VISS 315
++ S
Sbjct: 158 LLYS 161
>At5g19750.1 68418.m02348 peroxisomal membrane 22 kDa family protein
similar to SP|P42925 22 kDa peroxisomal membrane protein
{Mus musculus}; contains Pfam profile PF04117: Mpv17 /
PMP22 family
Length = 288
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 224 SNLATRRGTSFQLLIRMS*VPDGHHGVS 307
SN R GT+F L+R+S VP G+ G S
Sbjct: 57 SNWPGRSGTAFGHLVRVSAVPGGNSGGS 84
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/81 (23%), Positives = 33/81 (40%)
Frame = +1
Query: 154 KLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTE 333
KLA Q DD A + + + + E + + K + R ISS+E++
Sbjct: 497 KLANQGSETDDFQAKLSVLEAEKYQQAKELQITIEDLTKQLTSERERLRSQISSLEEEKN 556
Query: 334 GSERKQQMAKEYRVKVEKELR 396
Q K VK++ +L+
Sbjct: 557 QVNEIYQSTKNELVKLQAQLQ 577
>At3g09650.1 68416.m01144 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 778
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 319 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKG 492
+ + G + ++++E V V K+L D G + L+PK P+S+++ MKG
Sbjct: 368 DDEDSGYSARDEVSEEGVVDVFKKLLPNSVDPSG--EPPLLPKVFAPDSRIYTTLMKG 423
>At2g40090.1 68415.m04927 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 538
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 265 YKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDK 432
Y+N V A ++ S+ EGS + ++ E ++ ++L+E+C+ G+ K
Sbjct: 50 YRNTVTAASIAFDYEYSLLGLAEGSSERAKVKHEVHLRSAQKLQELCFKNGGIYIK 105
>At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 27.1 bits (57), Expect = 7.7
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +1
Query: 130 KEELV-QRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 306
+EELV ++ KL + ER D +A+ EV+ + S++ LLS A + +
Sbjct: 70 REELVTEKEKLLQ--ERQDKVASLETEVSSLRKKGSSDSVELLSKAQARATELEKQVEVL 127
Query: 307 ISSIEQKTEGSERKQQMAKEYRVKVEKELREI 402
+EQK + E + E EK+L E+
Sbjct: 128 KKFLEQKNKEKELIEAQTSE----TEKKLNEL 155
>At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 27.1 bits (57), Expect = 7.7
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +1
Query: 130 KEELV-QRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 306
+EELV ++ KL + ER D +A+ EV+ + S++ LLS A + +
Sbjct: 70 REELVTEKEKLLQ--ERQDKVASLETEVSSLRKKGSSDSVELLSKAQARATELEKQVEVL 127
Query: 307 ISSIEQKTEGSERKQQMAKEYRVKVEKELREI 402
+EQK + E + E EK+L E+
Sbjct: 128 KKFLEQKNKEKELIEAQTSE----TEKKLNEL 155
>At1g18180.1 68414.m02260 expressed protein
Length = 292
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Frame = +2
Query: 116 RCPSTRKNWCNVPNW-----PNKLSDMTTW 190
+CP + WC+V W PN +M W
Sbjct: 164 KCPENKGKWCDVGVWKYSRHPNYFGEMLLW 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,780,156
Number of Sequences: 28952
Number of extensions: 203543
Number of successful extensions: 642
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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