Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B04f
         (488 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    24   0.85 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.4  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   4.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   4.5  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   6.0  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 128 EPHRMWKEGRMMMVVQDERL 69
           EP   W+E    ++VQ ERL
Sbjct: 549 EPTNTWREAEQRILVQRERL 568



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 182 LAVVGDHIVGLGDHKTAMEPHRMWK 108
           + V  + ++ LG +  A+EP   W+
Sbjct: 561 ILVQRERLISLGINSDALEPEWCWQ 585


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 108 GGPYDDGGSGR 76
           GG  DDGGSG+
Sbjct: 408 GGVIDDGGSGQ 418


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 210 CHRQITRSRHLPSRSMFLLHRNTIR*YSLKHLHLQ 314
           CH++ TR  HL  ++   LH    R Y  +H   Q
Sbjct: 15  CHKRFTRDHHL--KTHMRLHTGE-RPYRCEHCDRQ 46


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 210 CHRQITRSRHLPSRSMFLLHRNTIR*YSLKHLHLQ 314
           CH++ TR  HL  ++   LH    R Y  +H   Q
Sbjct: 168 CHKRFTRDHHL--KTHMRLHTGE-RPYRCEHCDRQ 199


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 75  LVLNHHHHTA 104
           +VLN+HH TA
Sbjct: 294 VVLNYHHRTA 303


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 75  LVLNHHHHTA 104
           +VLN+HH TA
Sbjct: 294 VVLNYHHRTA 303


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 75  LVLNHHHHTA 104
           +VLN+HH TA
Sbjct: 294 VVLNYHHRTA 303


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 75  LVLNHHHHTA 104
           +VLN+HH TA
Sbjct: 294 VVLNYHHRTA 303


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 75  LVLNHHHHTA 104
           +VLN+HH TA
Sbjct: 294 VVLNYHHRTA 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,359
Number of Sequences: 336
Number of extensions: 1833
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)