Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B04f
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    27   1.5  
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f...    25   4.6  

>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 353 EEKTLVYVLVKNQRNSLKSSSRRQRQPNLRSL 448
           +E+TLV V  ++ R  L SSS+  ++P L+++
Sbjct: 205 KEETLVEVSGRSLRKLLSSSSKNPKEPRLQTI 236


>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
           factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 377 LVKNQRNSLKSSSRRQRQPNLRSLKSTSSDTNPEPE 484
           L  ++   +K SS   R P + S    ++DTN EP+
Sbjct: 149 LEASKDGKIKPSSSNTRYPAISSKGPITTDTNDEPD 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,238
Number of Sequences: 5004
Number of extensions: 26483
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)