Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B04f
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0072 + 13218669-13218706,13218715-13218781,13220400-132204...    28   4.6  
03_02_0164 - 6066744-6067637                                           27   6.1  
01_01_0443 - 3314002-3314565                                           27   8.1  

>12_02_0072 +
           13218669-13218706,13218715-13218781,13220400-13220471,
           13222107-13222182,13222309-13222943
          Length = 295

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 233 PAPPKQIYVPPPQKHY 280
           P PP   YVPPPQ +Y
Sbjct: 264 PPPPAYPYVPPPQYYY 279


>03_02_0164 - 6066744-6067637
          Length = 297

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 84  NHHHHTALLPHPMGLHR-GLMVPQPHNMVPHNS 179
           +HHHH  LL +P   HR GL  P    +  H S
Sbjct: 151 HHHHHHQLLGYPQHHHRFGLAGPTVAALYQHPS 183


>01_01_0443 - 3314002-3314565
          Length = 187

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 233 PAPPKQIYVPPPQKH 277
           P PP+Q Y PPP  H
Sbjct: 30  PPPPQQQYTPPPPAH 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,501,735
Number of Sequences: 37544
Number of extensions: 210462
Number of successful extensions: 706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)