Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B04f
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.3  
SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12)          27   8.3  

>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 654

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 2/120 (1%)
 Frame = +3

Query: 87  HHHHTALLPHPMGL-HRGLMVPQPHNMVPHN-SQ*CINMYTCMCHRQITRSRHLPSRSMF 260
           HHHH AL   P  +    ++    H   P + S  CI + T + HR       LPS   F
Sbjct: 488 HHHHPALPSSPSFIVSITILHCHHHRHSPSSPSPSCIAIITVIHHRH-HHHPALPSSPSF 546

Query: 261 LLHRNTIR*YSLKHLHLQHRPHLLFLCNLRTKRKLSCMC*LRTRGTA*NRHPDASANPTF 440
           ++   TI       LH  H  H        + +  SC+  +       N HP   ++P+F
Sbjct: 547 IIVSITI-------LHCHHHRH------SSSSQSPSCIAIITVIHHRLNHHPALPSSPSF 593


>SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1101

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 227 EIPAPPKQIYVPPPQKHYKI 286
           +IPAPP +  + PP KH K+
Sbjct: 94  QIPAPPTREQLGPPSKHKKL 113


>SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 224 NEIPAPPKQIYVPPPQKHYKIVF 292
           NE   PP     PPPQKH + VF
Sbjct: 399 NEFLPPPPPYEPPPPQKHPEEVF 421


>SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12)
          Length = 1286

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 383  KNQRNSLKSSSRRQRQPNLRSLKSTSS 463
            K + NS+  SS RQR+PN  SL+ T S
Sbjct: 1140 KERSNSVAQSSLRQRKPN-TSLRKTKS 1165



 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 383  KNQRNSLKSSSRRQRQPNLRSLKSTSS 463
            K + NS+  SS RQR+PN  SL+ T S
Sbjct: 1203 KERSNSVAQSSLRQRKPN-TSLRKTKS 1228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,624,028
Number of Sequences: 59808
Number of extensions: 230715
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)