Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B04f
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81055-5|CAB02894.1|  278|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical...    27   9.7  

>Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical
           protein F10F2.4 protein.
          Length = 656

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +3

Query: 276 TIR*YSLKHLHLQHRPHLLFLCNLRTKRKLSC 371
           TIR   L  L+L   PH LF  NLR  R   C
Sbjct: 50  TIRQLHLNSLNLPQPPHFLFHPNLRVLRMSRC 81


>Z81055-5|CAB02894.1|  278|Caenorhabditis elegans Hypothetical
           protein F01G10.6 protein.
          Length = 278

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 301 TYTSNTDRTCYSCATSERRE 360
           TY   T R CY+CATSE ++
Sbjct: 17  TYCQTT-RNCYTCATSELKD 35


>AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical
           protein Y51A2D.18 protein.
          Length = 550

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 103 PSFHILWGSIAVLWSPSPTIWS 168
           P  H +W ++A+ WSP+  I+S
Sbjct: 209 PKKHRMWINMAITWSPNMPIYS 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,170,628
Number of Sequences: 27780
Number of extensions: 161854
Number of successful extensions: 556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)