Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B04f
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    24   0.76 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.0  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   7.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.3  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 431 PNLRSLKSTSSDTNPEPE 484
           PN+ ++ ST S   PEPE
Sbjct: 16  PNMPTMDSTVSSAKPEPE 33


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 125 PHRMWKEGRMMMVVQDE 75
           PHR+WK   +M    DE
Sbjct: 102 PHRLWKPDVLMYNSADE 118


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 233 PAPPKQIYVPPPQKHYKI 286
           PA P   YV PP KH K+
Sbjct: 111 PASPG--YVQPPTKHQKL 126


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 210 CHRQITRSRHL 242
           CH++ TR  HL
Sbjct: 15  CHKRFTRDHHL 25


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 380 VKNQRNSLKSSSRRQRQPNLRSLKSTSSDT 469
           V N   +L+  +++    +LRS  +TSS +
Sbjct: 238 VVNHEKALREQAKKMNVDSLRSNANTSSQS 267


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 130 IAVLWSPSPTIWSP 171
           +A  ++ SPT WSP
Sbjct: 509 LAAPFNASPTTWSP 522


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,327
Number of Sequences: 438
Number of extensions: 2100
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)