Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B04f
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02170.1 68414.m00145 latex-abundant family protein (AMC1) / ...    34   0.059
At2g18920.1 68415.m02209 hypothetical protein                          29   1.3  
At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative        27   6.8  
At1g70990.1 68414.m08190 proline-rich family protein                   27   6.8  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    27   9.0  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    27   9.0  

>At1g02170.1 68414.m00145 latex-abundant family protein (AMC1) /
           caspase family protein contains similarity to
           latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
           contains Pfam profile PF00656: ICE-like protease
           (caspase) p20 domain
          Length = 367

 Score = 33.9 bits (74), Expect = 0.059
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = +3

Query: 90  HHHTALLPHPMGLHRGLMVPQPHNMVPHNSQ*CINMYTCMCHRQITRSRHLPSRSMFLLH 269
           H     LPHP G  R ++    +    H  + CIN   CM H  I + +  P   + L  
Sbjct: 67  HAPPGQLPHPHGRKRAVICGISYRFSRHELKGCINDAKCMRHLLINKFKFSPDSILMLTE 126

Query: 270 RNT 278
             T
Sbjct: 127 EET 129


>At2g18920.1 68415.m02209 hypothetical protein
          Length = 135

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 380 VKNQRNSLKSSSRRQRQPNLRSL 448
           V   RNS+++SSRR RQP  RS+
Sbjct: 10  VTQTRNSVQTSSRRARQPRRRSI 32


>At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative
          Length = 233

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 72  PLVLNHHHHTALLPHPMGL 128
           PL   HH H + +PHP  L
Sbjct: 107 PLCTQHHQHVSYVPHPAHL 125


>At1g70990.1 68414.m08190 proline-rich family protein
          Length = 176

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 233 PAPPKQIYVPPPQKHY 280
           P+PPK+ Y PPP   Y
Sbjct: 115 PSPPKKSYCPPPPSTY 130


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 233 PAPPKQIYVPPPQKH 277
           P PP  I+ PPPQ H
Sbjct: 736 PPPPTPIHSPPPQSH 750


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 233 PAPPKQIYVPPPQKH 277
           P+PP  IY PPP  H
Sbjct: 543 PSPPSPIYSPPPPVH 557


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,783,362
Number of Sequences: 28952
Number of extensions: 157182
Number of successful extensions: 846
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)