Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B03f
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   3.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   5.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   9.9  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +2

Query: 323 ITM-EIKSDENIFCNKY 370
           ITM ++KS  +I+C KY
Sbjct: 150 ITMYDLKSHNDIYCEKY 166


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 202 SVFVSDITTSLTGRSFAPVTVISIFCTTSIPSKTLPKTT 86
           SV V+++TT++      P T +     T++P  +LP ++
Sbjct: 829 SVVVTNVTTTIN----TPTTSVISMSGTTVPITSLPASS 863


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 238 LSFVTLKGSATTSVFVSDITTSLTGRSFAPVTVISIFCTTSIPSKTLPK 92
           L++V  K      V + DI  S+TG++ A       +C   IP   L K
Sbjct: 145 LAYVAAK--LALGVRLPDIHNSVTGKTTACFEPSLDYCVVKIPRWDLGK 191


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 202 SVFVSDITTSLTGRSFAPVTVI 137
           S FVSD+ T L    F P  +I
Sbjct: 462 SNFVSDVVTKLRYEVFQPGDII 483


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 202 SVFVSDITTSLTGRSFAPVTVI 137
           S FVSD+ T L    F P  +I
Sbjct: 430 SNFVSDVVTKLRYEVFQPGDII 451


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 21   KDTNGSQFFITTVKTPWLDGRHV 89
            +D+   Q+     + PWL+G HV
Sbjct: 983  EDSMKQQYGKRRKEPPWLEGVHV 1005


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = +3

Query: 303 FLCDFYLSL 329
           F+CDFY+++
Sbjct: 257 FVCDFYIAM 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,745
Number of Sequences: 438
Number of extensions: 1747
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)