Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...   101   9e-23
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    25   5.2  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   5.2  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   9.0  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    25   9.0  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   9.0  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    25   9.0  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score =  101 bits (241), Expect = 9e-23
 Identities = 57/138 (41%), Positives = 85/138 (61%), Gaps = 2/138 (1%)
 Frame = +1

Query: 55  MSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGE 234
           M+ K R  +FP+R     +K RL GA  GH LLK+K++AL+ RFR I+  I + K  MG 
Sbjct: 1   MASKQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGR 60

Query: 235 VMKEAAFSLAEAKFTTG-DFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGS-DT 408
           VM+ AAFS+AE  F  G + N  + Q+V + ++++RSK++N++GV LP FE   D S D 
Sbjct: 61  VMQIAAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDD 120

Query: 409 YELGWFGPWWAAACKAQE 462
           ++L   G       KA++
Sbjct: 121 FQLTGLGKGGQQIQKARQ 138



 Score = 36.3 bits (80), Expect = 0.003
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = +2

Query: 422 GLARGGQQLAKLKKNFQSAVKLLVELASLQTS 517
           GL +GGQQ+ K ++ ++ AV+ LV+LAS Q++
Sbjct: 125 GLGKGGQQIQKARQVYEKAVETLVQLASYQSA 156


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 298 VVLQNVTKAQIKIRSKKDNVAGVTL----PIFESYQDGSDTYELGWFGPW 435
           VVL++  + +I+     D++  +T+    P F+  +DG+ TY      PW
Sbjct: 129 VVLEDQKRYRIRASINMDSIIDITVHQDAPPFKIGEDGNSTYGTDPSKPW 178


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 290  STKLCYKMLPRLKSRLGPRRTMLLVSPSQSLSHTRMVLIPMSWA 421
            S K     L  L SR   R +   +    SL HT  +LI + WA
Sbjct: 1065 SIKRIVSRLQPLHSRQYTRESPFSIKDFMSLEHTHTLLICLYWA 1108


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 174 KGISLLLEETMAFHCTSQAT 115
           K IS++ E  MAFHC S  T
Sbjct: 255 KHISVIHEGNMAFHCDSCGT 274


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 284 ETSTKLCYKMLPRLKSRLG-PRRTMLLVSPSQSLSHTRMVLIPMSWAGLARGGQQLAK 454
           ET+ KLC+        RL  P  T +   P        + LIP+  A L +GG  L+K
Sbjct: 177 ETNEKLCFDRSKAYGKRLDIPSGTAIRFEPGVMKI---VNLIPIGGAKLIQGGNSLSK 231


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 313 VTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYEL 417
           +TK  +   + KD + G  +P F+ Y+   D YEL
Sbjct: 103 ITKKSLHNVASKDYIRGSHVPCFQPYE---DVYEL 134


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 79  IFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMK--EAA 252
           I PS    +    + +    G  +L K++      F+MI+SK  ETK    EV+   EAA
Sbjct: 589 IMPSESKNIFETPKTSSIHAGSIILCKQSKKSPCNFKMIVSKNRETKRYDFEVLSALEAA 648

Query: 253 FSLAEAK 273
             ++  +
Sbjct: 649 IIVSRIR 655


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,597
Number of Sequences: 5004
Number of extensions: 42516
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)