Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   8e-06
SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)            31   0.44 
SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)                 28   5.4  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)                   28   5.4  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         27   7.1  
SB_21676| Best HMM Match : TrbF (HMM E-Value=0.99)                     27   7.1  
SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06)              27   9.4  
SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 23/32 (71%), Positives = 28/32 (87%)
 Frame = +2

Query: 422 GLARGGQQLAKLKKNFQSAVKLLVELASLQTS 517
           GL+RGGQQL+K ++ +  AVKLLVELASLQTS
Sbjct: 28  GLSRGGQQLSKCQEVYGKAVKLLVELASLQTS 59



 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 20/40 (50%), Positives = 24/40 (60%)
 Frame = +1

Query: 343 KKDNVAGVTLPIFESYQDGSDTYELGWFGPWWAAACKAQE 462
           +KDNVAGV LPIFE   DG+++YEL           K QE
Sbjct: 2   RKDNVAGVLLPIFEPVSDGTNSYELTGLSRGGQQLSKCQE 41


>SB_12657| Best HMM Match : Helicase_C (HMM E-Value=1.2e-10)
          Length = 228

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +1

Query: 49  IKMSGKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRM---ILSKIIETK 219
           I+MSG+        RG  +LI     G   G GLLK  AD L   F +   ++  ++  +
Sbjct: 105 IQMSGRAGRRGLDERGIVILIIDEKMGPDVGKGLLKGHADPLNSAFHLTYNMVLNLLRVE 164

Query: 220 TLMGEVMKEAAF 255
            +  E+M E +F
Sbjct: 165 EINPEIMLEKSF 176


>SB_53572| Best HMM Match : efhand (HMM E-Value=0.0053)
          Length = 263

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 388 YQDGSDTYELGWFGPW 435
           Y DGSDT E+ +FG W
Sbjct: 96  YWDGSDTNEIPYFGAW 111


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 415 THRYQNHPGMTQRLGG*HQQH 353
           THRY  HP +T R    HQQH
Sbjct: 239 THRYHQHPQVTHRY---HQQH 256


>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
          Length = 781

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 415 LGWFGPWWAAACKAQEEL 468
           +GWF P W  AC A+ +L
Sbjct: 341 VGWFAPPWVRACMAEYQL 358


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 391  QDGSDTYELGWFGPWWAAACKAQEELPERCE 483
            Q G      GWFGP  +  CK   E   +C+
Sbjct: 943  QSGIKICHSGWFGPICSVHCKETNEKQYKCD 973


>SB_21676| Best HMM Match : TrbF (HMM E-Value=0.99)
          Length = 681

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +2

Query: 302 CYKMLPRLKSRLGPRRTMLLVSPSQSLSHTRMVLIPMSWAGLARGGQQLAKLKKNFQSAV 481
           C  +  R+  R GP R +        LS+  +++  +SW       +QL  + K F+  +
Sbjct: 21  CVLLDDRVYLRHGPHRQLEAFHLCNVLSNAPVLIEQLSWFSPTSFAEQLTSITKPFRENI 80

Query: 482 KLLV 493
             LV
Sbjct: 81  AALV 84


>SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06)
          Length = 406

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 163 ADALQVRFRMILSKIIET--KTLMGEVMKEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKI 336
           AD   +R   +  + IE   K L     +EAA  LAE +FT  ++ ++  QNV   Q ++
Sbjct: 63  ADEEAIRRLKMAEETIENLQKNLAATKQEEAAL-LAEMEFTGQEYEEMQEQNVRLLQ-QL 120

Query: 337 RSKKD 351
           R K D
Sbjct: 121 REKDD 125


>SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 990

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 291 QPSCATKCYQGSNQD*VQEGQCCW-CHP 371
           + SC+  C  G  +D    G+CCW C P
Sbjct: 831 ESSCSPVCPVGYIRDTKHAGKCCWSCSP 858


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,003,584
Number of Sequences: 59808
Number of extensions: 320360
Number of successful extensions: 641
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)