BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS302B02f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ... 112 1e-25 At1g56130.1 68414.m06445 leucine-rich repeat family protein / pr... 32 0.20 At3g55060.1 68416.m06115 expressed protein contains weak similar... 29 1.4 At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 29 1.9 At5g11370.1 68418.m01327 hypothetical protein various predicted ... 28 4.4 At1g72890.1 68414.m08431 disease resistance protein (TIR-NBS cla... 27 5.8 At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent phos... 27 7.7 >At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) identical to Vacuolar ATP synthase subunit D (EC 3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana] Length = 261 Score = 112 bits (270), Expect = 1e-25 Identities = 55/123 (44%), Positives = 84/123 (68%), Gaps = 2/123 (1%) Frame = +1 Query: 55 MSGKD-RLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 231 M+G++ RL + P+ ++K RL GA +GH LLKKK+DAL V+FR +L KI+ K MG Sbjct: 1 MAGQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMG 60 Query: 232 EVMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDT 408 ++MK ++F+L E K+ GD VVL+NV +A +K+RS+ +N+AGV LP F+ + +G Sbjct: 61 DMMKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETK 120 Query: 409 YEL 417 +L Sbjct: 121 NDL 123 Score = 40.3 bits (90), Expect = 8e-04 Identities = 19/32 (59%), Positives = 25/32 (78%) Frame = +2 Query: 422 GLARGGQQLAKLKKNFQSAVKLLVELASLQTS 517 GLARGGQQ+ + + A+++LVELASLQTS Sbjct: 125 GLARGGQQVRACRVAYVKAIEVLVELASLQTS 156 >At1g56130.1 68414.m06445 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain Length = 1032 Score = 32.3 bits (70), Expect = 0.20 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = +1 Query: 85 PSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLA 264 PS+G G + G + G GLL A + R + + + L+G +K F+ + Sbjct: 628 PSKGKNRT--GTIVGVIVGVGLLSILAGVVMFTIRKRRKRYTDDEELLGMDVKPYIFTYS 685 Query: 265 EAKFTTGDFN 294 E K T DF+ Sbjct: 686 ELKSATQDFD 695 >At3g55060.1 68416.m06115 expressed protein contains weak similarity to intracellular protein transport protein USO1 (Swiss-Prot:P25386) [Saccharomyces cerevisiae]; expression supported by MPSS Length = 896 Score = 29.5 bits (63), Expect = 1.4 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = +2 Query: 290 STKLCYKMLPRLKSRLG--PRRTMLLVSPSQSLSHTRMVLIPMSWAGLARGGQQLAKLKK 463 S++LCYK+L +K +L P S LS M+ M G+ RG + L + + Sbjct: 639 SSQLCYKLLKFIKGKLTQLPETYQDKNSVKDGLSEQFMIESEMKVHGIRRGTENLKRSLQ 698 Query: 464 NFQSAVKLLVELASLQT 514 S V E +S T Sbjct: 699 TVTSVVASNSESSSSNT 715 >At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing protein low similarity to transcription co-repressor Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile PF02671: Paired amphipathic helix repeat Length = 1378 Score = 29.1 bits (62), Expect = 1.9 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = -3 Query: 519 KEVCSDANSTKSFTALWKFFLSFASCCPPRAKPAQLI 409 +E+CS LW+ FL PPRAK L+ Sbjct: 723 EELCSTKEQLSKVLRLWENFLEAVLGVPPRAKGTDLV 759 >At5g11370.1 68418.m01327 hypothetical protein various predicted proteins, Arabidopsis thaliana Length = 311 Score = 27.9 bits (59), Expect = 4.4 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +2 Query: 347 RTMLLVSPSQSLSHTRMVLIPMSWAGLARGGQQLAKLKKNFQSAVKLLVEL 499 R ++ P SLS+ + + + A +ARG + KL K+ S +L + L Sbjct: 127 RKFAVIIPQSSLSYLIVNMPKLEEADIARGSHDVKKLLKSISSVKRLSLYL 177 >At1g72890.1 68414.m08431 disease resistance protein (TIR-NBS class), putative domain signature TIR-NBS exists, suggestive of a disease resistance protein. Length = 438 Score = 27.5 bits (58), Expect = 5.8 Identities = 12/45 (26%), Positives = 23/45 (51%) Frame = +2 Query: 290 STKLCYKMLPRLKSRLGPRRTMLLVSPSQSLSHTRMVLIPMSWAG 424 +TK C++ L +K+RL ++ +L+ + L + SW G Sbjct: 298 TTKNCHRCLKTIKARLRNKKVLLVANDVDKLEQFDALAEEFSWFG 342 >At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative strong similarity to SP|Q42908 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (Phosphoglyceromutase) {Mesembryanthemum crystallinum}; contains Pfam profile PF01676: Metalloenzyme superfamily Length = 557 Score = 27.1 bits (57), Expect = 7.7 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Frame = -3 Query: 360 SNIVLLGPNLDLSLGNIL*HNLVEVSSCELSFSQRESSFFHYFTHKGFSLNDFAQDHTE- 184 S ++ P +D + G L HN V +C + +FF G+ N+ +++ E Sbjct: 328 SRYLVSPPEIDRTSGEYLTHNGVSTFACSETVKFGHVTFFWNGNRSGY-FNEKLEEYVEI 386 Query: 183 PHLKGISLLLEETM 142 P GIS ++ M Sbjct: 387 PSDSGISFNVQPKM 400 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,375,246 Number of Sequences: 28952 Number of extensions: 230675 Number of successful extensions: 562 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 553 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 561 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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