Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B01f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YMY0 Cluster: Proteasome subunit beta type; n=5; Plas...    35   1.3  

>UniRef50_Q4YMY0 Cluster: Proteasome subunit beta type; n=5;
           Plasmodium|Rep: Proteasome subunit beta type -
           Plasmodium berghei
          Length = 267

 Score = 34.7 bits (76), Expect = 1.3
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +1

Query: 334 IKLLII*NYYVCQLLQFF--ILYKVRSNLFFLETTHY 438
           +K+ ++ NYY C L+ FF  IL K +  LF+LE +HY
Sbjct: 102 LKIFLLYNYYCCNLIIFFSKILQK-KIQLFYLEHSHY 137


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,308,807
Number of Sequences: 1657284
Number of extensions: 6203723
Number of successful extensions: 11239
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 11047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11239
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)