Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   1.7  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.9  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   5.2  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   6.8  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 518 RTTVRD-ATQSAYTYYERDAMSLHFCFV*CVVSRKKRFDRTLYSIKNCK 375
           R  ++D A  S Y  Y R+    H C    + S  KR +RT++   +CK
Sbjct: 82  RMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIF-CNDCK 129


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -2

Query: 205 FSIFVLKYLYELNN-NHLTHDLAY-LYK 128
           F  +VL+Y+ ELNN NH    ++Y LYK
Sbjct: 537 FGNYVLQYVLELNNPNHTEAIISYFLYK 564


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 196 FVLKYLYELNNNHLTHDLAYLY 131
           F  K L+ LNN+++ H  +Y Y
Sbjct: 568 FTTKRLHSLNNSYMDHQKSYRY 589


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 416 KRFDRTLYSIKNCKS 372
           K F+R  Y+++NCKS
Sbjct: 101 KEFERAAYTLQNCKS 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,183
Number of Sequences: 5004
Number of extensions: 30109
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)