Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302B01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08190.1 68414.m00905 vacuolar assembly protein, putative (VP...    31   0.47 
At1g02730.1 68414.m00226 cellulose synthase family protein simil...    27   7.7  

>At1g08190.1 68414.m00905 vacuolar assembly protein, putative
           (VPS41) 99.8% identical to Vacuolar assembly protein
           VPS41 homolog (SP:P93043) [Arabidopsis thaliana];
           similar to vacuolar assembly protein vps41 GI:1835787
           from [Lycopersicon esculentum]
          Length = 980

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +1

Query: 1   PKLQTFMVLLMTSYRSFISINNRID*VLFVRSDSILTVFFKQACKGT-LSHE*DD 162
           P+L+  +V ++T YR+  S+ +  + +L     ++L   F +A +G  LSHE DD
Sbjct: 794 PRLRDRLVKIVTDYRTETSLRHGCNDILKTDIVNLLVKCFNEARRGVCLSHEDDD 848


>At1g02730.1 68414.m00226 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit [gi:13925881]
           from Nicotiana alata, cellulose synthase-4 [gi:9622880]
           from Zea mays
          Length = 1181

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +3

Query: 399 GAVESFFSRNHALYKTK 449
           G+VE FFSRN+A++ T+
Sbjct: 929 GSVEIFFSRNNAIFATR 945


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,696,165
Number of Sequences: 28952
Number of extensions: 133776
Number of successful extensions: 231
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)