Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    26   3.9  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   5.2  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    25   9.0  

>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 45  LAYVLLKSNSFEMATSDSEDFESADEGQNTPIKKDRKERLSSSNYTENSRELDH 206
           + Y  + S S E  T +SE  ++  +  NTP K +    L+++   +NS   D+
Sbjct: 4   MLYEGIDSKSIEEITEESEKTKTDLQKANTPNKTEAVHSLNNTCSEQNSGTKDY 57


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 63  KSNSFEMATSDSEDFESADEGQNTPIKKDRKERLSSS 173
           K+N+FE    +    E  +E    P++K++K    +S
Sbjct: 85  KANAFEAFADEQSVEEEEEEDSEKPVRKNKKSSKKAS 121


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 63  KSNSFEMATSDSEDFESADEGQ 128
           + ++FE  TSD EDF    E +
Sbjct: 70  RDSTFESETSDHEDFSGGSENE 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,476
Number of Sequences: 5004
Number of extensions: 33882
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)