Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995...    29   1.7  
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768...    27   6.9  

>04_03_0768 -
           19396146-19396607,19397855-19398175,19398424-19399569,
           19400073-19400855,19402114-19402149
          Length = 915

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 66  SNSFEMATSDSEDFESADEGQNTPIKKDRKERLSSSNYTENSRE 197
           S++ E AT D+EDFE +D+  +    K RK      ++ EN+ +
Sbjct: 38  SSNSEAAT-DNEDFEISDDDDDDRNHKHRKREARPQSFDENTEQ 80


>02_04_0480 -
           23274945-23275196,23275558-23275623,23276709-23276851,
           23276947-23277063,23277219-23278683,23279561-23280730
          Length = 1070

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/37 (27%), Positives = 26/37 (70%)
 Frame = +3

Query: 87  TSDSEDFESADEGQNTPIKKDRKERLSSSNYTENSRE 197
           T  +++ E   +  +TP+K+++KER++SS+  + +++
Sbjct: 315 TFSTKNKEKKRKAPSTPLKREQKERVASSDNKKETKK 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,604,862
Number of Sequences: 37544
Number of extensions: 175757
Number of successful extensions: 356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)