Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)               29   3.1  
SB_21549| Best HMM Match : SNF (HMM E-Value=2.3e-18)                   28   5.4  
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      28   5.4  
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)               27   7.1  
SB_5004| Best HMM Match : AA_kinase (HMM E-Value=0)                    27   7.1  
SB_30265| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)
          Length = 1143

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +3

Query: 63  KSNSFEMATSD--SEDFESADEGQNTPIKKDRKERLSSSNYTENSRELDHXXXXXXXXXX 236
           KS  +    SD  S+D E++D  +   IKK +K++       +N ++             
Sbjct: 748 KSRKYSTTDSDCSSDDGENSDSSRERSIKKHKKKKKRKKKIKKNRKKTMENESKNEKNKR 807

Query: 237 DTVKNKEE 260
             VKN E+
Sbjct: 808 GPVKNNED 815


>SB_21549| Best HMM Match : SNF (HMM E-Value=2.3e-18)
          Length = 515

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -1

Query: 434 FTLCIFRFLCCLVL*VIRVYCFIFIGLQYMSV 339
           + +C+  +LCC+   VI  + F ++ + + +V
Sbjct: 368 YAICMISYLCCIYYIVILAWTFYYLFMSFQAV 399


>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 434 FTLCIFRFLCCLVL*VIRVYCFIFIGLQYM 345
           FTL +  +LCC++L V+   CF  + + Y+
Sbjct: 146 FTLLVMGYLCCILL-VMGCLCFTLLVMGYL 174


>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
          Length = 865

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 57  LLKSNSFEMATSDSEDFESADEGQNTPIKKDRKERLSSSNYTENSRELD 203
           +  S + E++    E  +S D+ ++TP    R+ R SSS++  +SRE D
Sbjct: 245 IASSTTEELSKDGKERSKSKDQEKSTP----RERRNSSSHHRSSSREKD 289


>SB_5004| Best HMM Match : AA_kinase (HMM E-Value=0)
          Length = 835

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +1

Query: 382 RITHKTRQQRNLKIQRVKIPVGMILMI 462
           R+  KTR  ++L +Q+  +P+G++++I
Sbjct: 429 RVLRKTRVAKDLVLQQETVPIGVLMVI 455


>SB_30265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 90  SDSEDFESADEGQNTPIKKDRKERLSSSNYTENSR 194
           +D++D E    G+ T   + +K R   S+YT NS+
Sbjct: 261 NDNDDDEDFTPGKLTVKMRQKKRRKEESSYTANSK 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,153,764
Number of Sequences: 59808
Number of extensions: 234092
Number of successful extensions: 528
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)