Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43520.1 68418.m05321 DC1 domain-containing protein contains ...    28   4.4  
At1g71380.1 68414.m08241 glycosyl hydrolase family 9 protein sim...    28   4.4  
At5g27690.1 68418.m03321 heavy-metal-associated domain-containin...    27   5.8  
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    27   7.7  

>At5g43520.1 68418.m05321 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 250

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 328 QYPLTLMYCSPIKMKQ*TRIT 390
           ++PLTL+YC+P K ++ T  T
Sbjct: 135 EHPLTLLYCTPCKGREDTYFT 155


>At1g71380.1 68414.m08241 glycosyl hydrolase family 9 protein
           similar to beta-glucanase GB:AAB72171
          Length = 484

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +3

Query: 18  IFSLVNSYLLAYVLLKSNSFEMATSDSEDFESADEGQNTPIKKDRKERLSSSNYTE 185
           IFS  N Y  AYVLL   +     S+ E ++ A E     I  D     SS+ YT+
Sbjct: 267 IFSWDNKYAGAYVLLSRRALLNKDSNFEQYKQAAENFICKILPDSPS--SSTQYTQ 320


>At5g27690.1 68418.m03321 heavy-metal-associated domain-containing
           protein very low similarity to copper homeostasis factor
           from Arabidopsis thaliana [gi:3168840]; contains Pfam
           heavy metal associated domain PF00403
          Length = 352

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 315 PIFHHHQYQNHP 280
           P  HHHQ QNHP
Sbjct: 229 PHLHHHQQQNHP 240


>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 60  LKSNSFEMATSDSEDFESADEGQNTPIKKDRKERLSSSNYTENSRELD 203
           LK +S +++  D+E+    D  ++   +KDR    S     E SR+ D
Sbjct: 42  LKKDSSKISEKDNENGRDKDGNKDRDREKDRDREKSRDRDREKSRDRD 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,264,594
Number of Sequences: 28952
Number of extensions: 161606
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)