Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 105 5e-24
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 28 0.73
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 0.73
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac... 25 5.2
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 25 6.8
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 25 6.8
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 6.8
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.0
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 9.0
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 105 bits (251), Expect = 5e-24
Identities = 56/124 (45%), Positives = 79/124 (63%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAAGVASD 342
PQFQQ+R ++QQNP +L +LQQIGQ +PAL Q I+Q+ EAF+++L E +A
Sbjct: 254 PQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAEGAEGESA----- 308
Query: 341 ENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS 162
P G Q IQ++ ++ E+I+RL LGF ++VIQAY AC+KNE LAAN+L
Sbjct: 309 -------LPSGGIQ--IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFE 359
Query: 161 QNFD 150
+
Sbjct: 360 HGHE 363
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 344 DENVADIQQPQLGSQNVIQV-SAQDKEAIERLKALGFPEHMVIQAYFACEK 195
D ++ + P+ +V++ SA + A RLK LG + ++ CEK
Sbjct: 442 DNTLSSVDIPRASIAHVVRATSAMSQSASARLKNLGLQQKAILCTLVVCEK 492
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 28.3 bits (60), Expect = 0.73
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 503 RAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPV 372
R V Q++ LN ++ Q T P ++ I ++E + N P+
Sbjct: 624 RTVAQRHKEQLNQLMNQFNSTQPHFIRCIVPNEEKKMHTFNRPL 667
>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 5.2
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = -1
Query: 386 LNEPVNPSAAGVASDENVADI---QQPQLGSQNVIQVS-AQDKEAIERLKALGFPEHMVI 219
L + V P+A+ + +DE +D+ ++ GS N + + + R + G P + +
Sbjct: 18 LTQEVRPTASQIIADEEASDLDEYEEDLEGSGNEDDFGPSMSRSSRGRKRRKGDP--LEL 75
Query: 218 QAYFACEKNENLAANFLL 165
Q+ F E+NE A NF L
Sbjct: 76 QSQFE-ERNETDAINFQL 92
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = -1
Query: 380 EPVNPSAAGVASDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYF 207
+P + + G + V I+ + S N +++S+Q + L PE V YF
Sbjct: 642 KPSHSDSKGFSRGVGVVGIKPKNIKSSNTVKLSSQQLKKESVLLNCTIPEFNVSNTYF 699
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -1
Query: 275 DKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLSQNFDD*VLD 135
++ AIE+L+A+GFP +A A ++ A L ++ +D +D
Sbjct: 578 NQSAIEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHMEDPEID 624
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.0 bits (52), Expect = 6.8
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +2
Query: 197 FHKQNRLVSPYVQENQELLIFXXXXXXXXXXXXHSVTLIEV-----VEYQQ-HSHLMLLP 358
F K+ R S + E++++ + HSV ++ VE++ + + LL
Sbjct: 1428 FLKRFRRSSSTIYEHRQIWLDIMIKYLEDLRLQHSVKETQINDLPLVEFKYVYKEISLLD 1487
Query: 359 QQKGSLVHLTF*QRLLDVG*LLVIKLD 439
+QK SL+H + R L+ G IK+D
Sbjct: 1488 EQKLSLLHQVYEIRKLNNGLYPTIKVD 1514
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 428 LQVISQHQEAFVRMLNEPVNPSAAGVASDENVADIQQP 315
+ ++S HQ +M NE + S+ V DE+ ++ P
Sbjct: 1756 IPIVSNHQTEGSQMFNEISSVSSIHVYHDESQPPVEMP 1793
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -1
Query: 506 MRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQE 402
+R +++ PN+ NA+ Q + P+L+ + H E
Sbjct: 666 LRQILRVTPNIANAICDQF-DSIPSLIHHLKTHGE 699
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,798
Number of Sequences: 5004
Number of extensions: 31081
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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