Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     83   1e-16
SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)             33   0.19 
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   29   1.8  
SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1)                      29   2.3  
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_21337| Best HMM Match : RnaseA (HMM E-Value=1.1)                    27   7.1  

>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
 Frame = -1

Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEP---VNPSAAGV 351
           PQF  MR ++QQNP +L  +LQ +GQ+NP+LLQ+IS HQ+ F+RMLNEP     P+A G 
Sbjct: 303 PQFITMRRMVQQNPGVLPQLLQSMGQSNPSLLQLISSHQDEFIRMLNEPDDGPQPAAGGE 362

Query: 350 ASDENVADIQQPQLGSQNVIQVSAQDKEAIER 255
              ++      P  G  + IQ++  +KEAIER
Sbjct: 363 GGQQSAPGEGAPPPG-VSYIQITPVEKEAIER 393


>SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)
          Length = 567

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
 Frame = -1

Query: 512 QQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPV-NPSAAGVASDEN 336
           +Q+R  ++     LNA LQ   + N  L Q+  Q  +A  R L + V +P       DE 
Sbjct: 473 EQLRVHMESIQVELNAPLQFKARLNELLSQIRLQQSQARERSLGKYVMDPQ----LEDEL 528

Query: 335 VADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQ 216
              ++Q Q+G  ++I +   D E ++ ++  G  E MV++
Sbjct: 529 KQHLEQQQVGLMHIIGIIKDDIEDLKTIEQ-GLGESMVVR 567


>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 308  GSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLLS 162
            G+    Q +A ++EA+  + ++GF     I+A  A + N   AA+++ S
Sbjct: 884  GASKGAQAAAVNEEAVSMIISMGFTRDQAIKALKATDNNLERAADWIFS 932


>SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1)
          Length = 281

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = -1

Query: 434 ALLQVISQHQEAFVRMLNEPVNPSAAGVA------SDENVADIQQPQLGSQNVIQVSAQD 273
           ALL+V  +H + F++ L EP++  +  +         + V D++Q  L    V++     
Sbjct: 115 ALLKVTKEHHQTFLQNLEEPISVDSDKIIRWHPQFKLDEVPDLEQGALPEAPVVKTFTSA 174

Query: 272 KEAIER 255
           K+ ++R
Sbjct: 175 KDVLDR 180


>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = -1

Query: 434 ALLQVISQHQEAFVRMLNEPVNPSAAGVA------SDENVADIQQPQLGSQNVIQVSAQD 273
           ALL+V  +H + F++ L EP++  +  +         + V D++Q  L    V++     
Sbjct: 799 ALLKVTKEHHQTFLQNLEEPISVDSDKIIRWHPQFKLDEVPDLEQGALPEAPVVKTFTSA 858

Query: 272 KEAIER 255
           K+ ++R
Sbjct: 859 KDVLDR 864


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 509 QMRAVIQQNPNLLNAVLQQIGQTNPALLQV 420
           Q R V+Q+NPN+  A++  I  ++  LL V
Sbjct: 170 QYRKVLQENPNIKIAIIDHITSSSALLLPV 199


>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1652

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 422 VISQHQEAFVRMLNEPVNPSAAGVASDEN 336
           V  +  EAF R+LN+  N  +  VASD+N
Sbjct: 888 VTPEAYEAFKRLLNDCFNTQSEQVASDQN 916


>SB_21337| Best HMM Match : RnaseA (HMM E-Value=1.1)
          Length = 344

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/54 (27%), Positives = 32/54 (59%)
 Frame = +3

Query: 51  EIHRLCRLKQ*ILQKKQHFFLLHLSFD*VKNLVIKILRQQKVSCKILIFFTSKI 212
           E  R+C   +  ++ + HF +   ++  ++N VI+ L++ +++ K L  FT+KI
Sbjct: 283 EKDRICPTCKNDVENEFHFLVQCQTYKELRNSVIQNLQRNQITQKRLFQFTNKI 336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,900,324
Number of Sequences: 59808
Number of extensions: 208209
Number of successful extensions: 504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)