Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A11f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D21090-1|BAA04652.1| 409|Homo sapiens XP-C repair complementing... 168 1e-41
BC020973-1|AAH20973.1| 409|Homo sapiens RAD23B protein protein. 168 1e-41
AY313777-1|AAP81008.1| 337|Homo sapiens RAD23-like protein B pr... 168 1e-41
AY165178-1|AAN47194.1| 409|Homo sapiens RAD23 homolog B (S. cer... 168 1e-41
AL137852-2|CAD13275.1| 409|Homo sapiens RAD23 homolog B (S. cer... 168 1e-41
AK223479-1|BAD97199.1| 409|Homo sapiens UV excision repair prot... 165 8e-41
D21235-1|BAA04767.1| 363|Homo sapiens HHR23A protein protein. 164 2e-40
BC088364-1|AAH88364.1| 362|Homo sapiens RAD23 homolog A (S. cer... 164 2e-40
BC014026-1|AAH14026.1| 363|Homo sapiens RAD23 homolog A (S. cer... 164 2e-40
AF549209-1|AAN39383.1| 363|Homo sapiens RAD23 homolog A (S. cer... 164 2e-40
AD000092-7|AAB51177.1| 363|Homo sapiens human RAD23A homolog pr... 164 2e-40
AB209713-1|BAD92950.1| 379|Homo sapiens UV excision repair prot... 164 2e-40
AF091085-1|AAC72954.1| 198|Homo sapiens unknown protein. 29 9.9
>D21090-1|BAA04652.1| 409|Homo sapiens XP-C repair complementing
protein (p58/HHR23B) protein.
Length = 409
Score = 168 bits (408), Expect = 1e-41
Identities = 84/126 (66%), Positives = 96/126 (76%), Gaps = 1/126 (0%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAA-GVAS 345
PQFQQMR +IQQNP+LL A+LQQIG+ NP LLQ ISQHQE F++MLNEPV + G
Sbjct: 283 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG 342
Query: 344 DENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLL 165
I + G N IQV+ Q+KEAIERLKALGFPE +VIQAYFACEKNENLAANFLL
Sbjct: 343 GGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402
Query: 164 SQNFDD 147
QNFD+
Sbjct: 403 QQNFDE 408
>BC020973-1|AAH20973.1| 409|Homo sapiens RAD23B protein protein.
Length = 409
Score = 168 bits (408), Expect = 1e-41
Identities = 84/126 (66%), Positives = 96/126 (76%), Gaps = 1/126 (0%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAA-GVAS 345
PQFQQMR +IQQNP+LL A+LQQIG+ NP LLQ ISQHQE F++MLNEPV + G
Sbjct: 283 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG 342
Query: 344 DENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLL 165
I + G N IQV+ Q+KEAIERLKALGFPE +VIQAYFACEKNENLAANFLL
Sbjct: 343 GGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402
Query: 164 SQNFDD 147
QNFD+
Sbjct: 403 QQNFDE 408
>AY313777-1|AAP81008.1| 337|Homo sapiens RAD23-like protein B
protein.
Length = 337
Score = 168 bits (408), Expect = 1e-41
Identities = 84/126 (66%), Positives = 96/126 (76%), Gaps = 1/126 (0%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAA-GVAS 345
PQFQQMR +IQQNP+LL A+LQQIG+ NP LLQ ISQHQE F++MLNEPV + G
Sbjct: 211 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG 270
Query: 344 DENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLL 165
I + G N IQV+ Q+KEAIERLKALGFPE +VIQAYFACEKNENLAANFLL
Sbjct: 271 GGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 330
Query: 164 SQNFDD 147
QNFD+
Sbjct: 331 QQNFDE 336
>AY165178-1|AAN47194.1| 409|Homo sapiens RAD23 homolog B (S.
cerevisiae) protein.
Length = 409
Score = 168 bits (408), Expect = 1e-41
Identities = 84/126 (66%), Positives = 96/126 (76%), Gaps = 1/126 (0%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAA-GVAS 345
PQFQQMR +IQQNP+LL A+LQQIG+ NP LLQ ISQHQE F++MLNEPV + G
Sbjct: 283 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG 342
Query: 344 DENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLL 165
I + G N IQV+ Q+KEAIERLKALGFPE +VIQAYFACEKNENLAANFLL
Sbjct: 343 GGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402
Query: 164 SQNFDD 147
QNFD+
Sbjct: 403 QQNFDE 408
>AL137852-2|CAD13275.1| 409|Homo sapiens RAD23 homolog B (S.
cerevisiae) protein.
Length = 409
Score = 168 bits (408), Expect = 1e-41
Identities = 84/126 (66%), Positives = 96/126 (76%), Gaps = 1/126 (0%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAA-GVAS 345
PQFQQMR +IQQNP+LL A+LQQIG+ NP LLQ ISQHQE F++MLNEPV + G
Sbjct: 283 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG 342
Query: 344 DENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLL 165
I + G N IQV+ Q+KEAIERLKALGFPE +VIQAYFACEKNENLAANFLL
Sbjct: 343 GGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402
Query: 164 SQNFDD 147
QNFD+
Sbjct: 403 QQNFDE 408
>AK223479-1|BAD97199.1| 409|Homo sapiens UV excision repair protein
RAD23 homolog B variant protein.
Length = 409
Score = 165 bits (401), Expect = 8e-41
Identities = 83/126 (65%), Positives = 95/126 (75%), Gaps = 1/126 (0%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSAA-GVAS 345
PQFQQMR +IQQNP+LL A+LQQIG+ NP LLQ ISQHQE F++MLNEPV + G
Sbjct: 283 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG 342
Query: 344 DENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFLL 165
I + G N IQV+ Q+KEAI RLKALGFPE +VIQAYFACEKNENLAANFLL
Sbjct: 343 GGGSGGIAEAGSGHMNYIQVTPQEKEAIGRLKALGFPEGLVIQAYFACEKNENLAANFLL 402
Query: 164 SQNFDD 147
QNFD+
Sbjct: 403 QQNFDE 408
>D21235-1|BAA04767.1| 363|Homo sapiens HHR23A protein protein.
Length = 363
Score = 164 bits (398), Expect = 2e-40
Identities = 85/127 (66%), Positives = 97/127 (76%), Gaps = 2/127 (1%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSA--AGVA 348
PQFQ MR VIQQNP LL A+LQQ+GQ NP LLQ IS+HQE F++MLNEP A + V
Sbjct: 239 PQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVE 298
Query: 347 SDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFL 168
+ + PQ+ N IQV+ Q+KEAIERLKALGFPE +VIQAYFACEKNENLAANFL
Sbjct: 299 GEVGAIGEEAPQM---NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 167 LSQNFDD 147
LSQNFDD
Sbjct: 356 LSQNFDD 362
>BC088364-1|AAH88364.1| 362|Homo sapiens RAD23 homolog A (S.
cerevisiae) protein.
Length = 362
Score = 164 bits (398), Expect = 2e-40
Identities = 85/127 (66%), Positives = 97/127 (76%), Gaps = 2/127 (1%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSA--AGVA 348
PQFQ MR VIQQNP LL A+LQQ+GQ NP LLQ IS+HQE F++MLNEP A + V
Sbjct: 238 PQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVE 297
Query: 347 SDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFL 168
+ + PQ+ N IQV+ Q+KEAIERLKALGFPE +VIQAYFACEKNENLAANFL
Sbjct: 298 GEVGAIGEEAPQM---NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 354
Query: 167 LSQNFDD 147
LSQNFDD
Sbjct: 355 LSQNFDD 361
>BC014026-1|AAH14026.1| 363|Homo sapiens RAD23 homolog A (S.
cerevisiae) protein.
Length = 363
Score = 164 bits (398), Expect = 2e-40
Identities = 85/127 (66%), Positives = 97/127 (76%), Gaps = 2/127 (1%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSA--AGVA 348
PQFQ MR VIQQNP LL A+LQQ+GQ NP LLQ IS+HQE F++MLNEP A + V
Sbjct: 239 PQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVE 298
Query: 347 SDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFL 168
+ + PQ+ N IQV+ Q+KEAIERLKALGFPE +VIQAYFACEKNENLAANFL
Sbjct: 299 GEVGAIGEEAPQM---NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 167 LSQNFDD 147
LSQNFDD
Sbjct: 356 LSQNFDD 362
>AF549209-1|AAN39383.1| 363|Homo sapiens RAD23 homolog A (S.
cerevisiae) protein.
Length = 363
Score = 164 bits (398), Expect = 2e-40
Identities = 85/127 (66%), Positives = 97/127 (76%), Gaps = 2/127 (1%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSA--AGVA 348
PQFQ MR VIQQNP LL A+LQQ+GQ NP LLQ IS+HQE F++MLNEP A + V
Sbjct: 239 PQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVE 298
Query: 347 SDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFL 168
+ + PQ+ N IQV+ Q+KEAIERLKALGFPE +VIQAYFACEKNENLAANFL
Sbjct: 299 GEVGAIGEEAPQM---NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 167 LSQNFDD 147
LSQNFDD
Sbjct: 356 LSQNFDD 362
>AD000092-7|AAB51177.1| 363|Homo sapiens human RAD23A homolog
protein.
Length = 363
Score = 164 bits (398), Expect = 2e-40
Identities = 85/127 (66%), Positives = 97/127 (76%), Gaps = 2/127 (1%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSA--AGVA 348
PQFQ MR VIQQNP LL A+LQQ+GQ NP LLQ IS+HQE F++MLNEP A + V
Sbjct: 239 PQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVE 298
Query: 347 SDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFL 168
+ + PQ+ N IQV+ Q+KEAIERLKALGFPE +VIQAYFACEKNENLAANFL
Sbjct: 299 GEVGAIGEEAPQM---NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 355
Query: 167 LSQNFDD 147
LSQNFDD
Sbjct: 356 LSQNFDD 362
>AB209713-1|BAD92950.1| 379|Homo sapiens UV excision repair protein
RAD23 homolog A variant protein.
Length = 379
Score = 164 bits (398), Expect = 2e-40
Identities = 85/127 (66%), Positives = 97/127 (76%), Gaps = 2/127 (1%)
Frame = -1
Query: 521 PQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPVNPSA--AGVA 348
PQFQ MR VIQQNP LL A+LQQ+GQ NP LLQ IS+HQE F++MLNEP A + V
Sbjct: 255 PQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVE 314
Query: 347 SDENVADIQQPQLGSQNVIQVSAQDKEAIERLKALGFPEHMVIQAYFACEKNENLAANFL 168
+ + PQ+ N IQV+ Q+KEAIERLKALGFPE +VIQAYFACEKNENLAANFL
Sbjct: 315 GEVGAIGEEAPQM---NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFL 371
Query: 167 LSQNFDD 147
LSQNFDD
Sbjct: 372 LSQNFDD 378
>AF091085-1|AAC72954.1| 198|Homo sapiens unknown protein.
Length = 198
Score = 29.1 bits (62), Expect = 9.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 510 ANACCYSTESQFVKCCVTAD 451
A +CCY E++ +KCC T +
Sbjct: 4 AFSCCYGAEAEDIKCCNTCE 23
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,183,228
Number of Sequences: 237096
Number of extensions: 1014159
Number of successful extensions: 6108
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6096
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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