Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...   120   1e-28
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    27   1.7  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   1.7  
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    26   3.0  
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    26   3.0  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    25   5.2  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   9.0  

>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score =  120 bits (289), Expect = 1e-28
 Identities = 54/102 (52%), Positives = 74/102 (72%)
 Frame = +1

Query: 154 KGLAVFTSGGDSQGMNAAVRSVVRMGIYLGCKVYFIREGYQGMVDGGDNIEEANWSSVSS 333
           K +AV TSGGDS GMNA VR+V R+ I+ GC  + I EGY+G+V GGD I++  W  V  
Sbjct: 195 KKIAVMTSGGDSPGMNAVVRAVARIAIHRGCDAFAIYEGYEGLVQGGDMIKQLQWGDVRG 254

Query: 334 IIHKGGTIIGSARCMEFIKKEGRLKAAYNLMSRGITNLVVIG 459
            + +GGT+IG+ARCM F ++ GRL+AA NL+S GI +++V G
Sbjct: 255 WLAEGGTLIGTARCMAFRERPGRLRAAKNLISAGIDSIIVCG 296


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 43  TKNNLN*LFIIEDYNILITTMDGSATQKFIGRGSHKGKGLAVFTSGGDSQGMN 201
           +KN  N +F ++DY +L  T D S  +K     S +   + V+TS    +G +
Sbjct: 528 SKNLPNQIFAVKDYKVLPLTGDNSIFEKI----SQEANSIFVYTSETKVEGFS 576


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 299 LSPPSTMPWYPSRIKYTLHPKYMPIR 222
           + PP+ +PWYP  + Y +  +   IR
Sbjct: 95  IPPPTVLPWYPDGLAYIVDAQKDVIR 120


>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 139 GSHKGKGLAVFTSGGDSQGMNAAVRSVVRMG-IYLGCKV--YFIREGYQGMVDGGDNI 303
           GS   KG+ V   G +++  N+A+R  VR+  I  G KV  +   +G    VD  D +
Sbjct: 43  GSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEV 100


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 139 GSHKGKGLAVFTSGGDSQGMNAAVRSVVRMG-IYLGCKV--YFIREGYQGMVDGGDNI 303
           GS   KG+ V   G +++  N+A+R  VR+  I  G KV  +   +G    VD  D +
Sbjct: 43  GSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEV 100


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = +1

Query: 271 YQGMVDGGDNIEEANWSSVSSIIHKGGTIIGSARCMEFIKKEGRLKAAYNLMSRGITNLV 450
           YQ + D     E+  ++  S  ++ GGT  G  R +++IK  G      + + + I+   
Sbjct: 25  YQVLTDRFALDEDNFYAKASGNLYLGGTWKGITRNLDYIKSLGCTAIWISPIVKNISETT 84

Query: 451 VIGX*WFADWCQFXSDKN 504
             G  +   W Q  +  N
Sbjct: 85  DCGQAYHGYWAQDMTQLN 102


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 326 TEDQFASSMLSPPSTMPWYPSRIKYTLH 243
           TE   +SSML PPS+ P + S +  +LH
Sbjct: 87  TEIDSSSSMLPPPSSDP-FSSPLSSSLH 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,258
Number of Sequences: 5004
Number of extensions: 40685
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)