Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0118 - 14816587-14816754,14816866-14816994,14817744-148178... 33 0.18
06_01_0486 - 3455030-3455770 32 0.32
03_02_0970 + 12805537-12806253 29 3.0
02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047... 28 4.0
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296... 28 4.0
11_04_0053 - 12881524-12881592,12882481-12882546,12882647-128828... 28 5.2
03_05_0393 - 23754652-23754768,23754868-23755437 28 5.2
01_01_1155 + 9191249-9192439 28 5.2
01_01_0749 - 5794140-5794346,5795445-5795558,5795856-5796008,579... 27 9.1
>09_04_0118 -
14816587-14816754,14816866-14816994,14817744-14817824,
14817943-14818047,14818137-14818253,14818335-14818475,
14818965-14819039,14819135-14819236,14819318-14819413,
14819838-14819935,14820056-14820141,14820158-14820231,
14820648-14820758,14821054-14821152,14821941-14822008,
14822855-14822885,14823041-14823148
Length = 562
Score = 32.7 bits (71), Expect = 0.18
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 163 AVFTSGGDSQGMNAAVRSVV-RMGIYLGCKVYFIREGYQGMVDGGDNIEEANWSSVSSII 339
A+ T GG G+N +R +V + IY + I+ GY+G + G + V +I
Sbjct: 208 AIVTCGGLCPGLNDVIRQIVFTLEIYGVKNIVGIQFGYRGFFEKGLKEMPLSRKVVENIN 267
Query: 340 HKGGTIIGSAR 372
GG+ +G +R
Sbjct: 268 LSGGSFLGVSR 278
>06_01_0486 - 3455030-3455770
Length = 246
Score = 31.9 bits (69), Expect = 0.32
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -1
Query: 293 PPSTMPWYPSRIKYTLHPKYMPIRTTDRTAAFIP*ESPPLVNTASP 156
PP T P+ PS Y P Y+P T +IP +PP V +P
Sbjct: 86 PPPTPPYVPSPPPYV--PPYIPPPTPPYVPPYIPPPTPPYVPPPTP 129
>03_02_0970 + 12805537-12806253
Length = 238
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 265 EGYQGMVDGGDNIEEANWSSVSSIIHKGGTIIGSARCMEFIKKEGRLKAAYNLMSR 432
+GY+ GG E+ W +S +GG G RC EF +GR Y + R
Sbjct: 126 DGYRPCRGGGAGGEQRPWFKAASEAWRGG---GGPRC-EFRSDDGRAVQRYRMEGR 177
>02_05_0982 -
33303500-33304011,33304091-33304208,33304606-33304726,
33304811-33304877,33304968-33305102,33305186-33305297,
33305852-33306009,33306177-33306300,33306406-33306542,
33307284-33307403,33307878-33308025,33308674-33308931,
33309090-33309127,33309232-33309674,33309761-33309845,
33310063-33310123,33310277-33310453,33311611-33312408,
33314394-33314693
Length = 1303
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 262 REGYQGMVDGGDNIEEANWSSVSSIIHK 345
+ GY+ V G+ EEA W++V IHK
Sbjct: 21 KRGYREAVAEGNREEEARWANVIGDIHK 48
>02_05_0975 +
33227431-33227730,33228556-33228636,33228883-33229680,
33230829-33231005,33231159-33231274,33231422-33231520,
33231598-33232040,33232147-33232184,33232343-33232600,
33233378-33233525,33233989-33234108,33234884-33234984,
33235090-33235213,33235386-33235498,33236103-33236214,
33236298-33236432,33236527-33236593,33236685-33236741,
33236774-33236900,33237221-33237338,33237418-33237929
Length = 1347
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 262 REGYQGMVDGGDNIEEANWSSVSSIIHK 345
+ GY+ V G+ EEA W++V IHK
Sbjct: 21 KRGYREAVAEGNREEEARWANVIGDIHK 48
>11_04_0053 -
12881524-12881592,12882481-12882546,12882647-12882808,
12883123-12883266,12883975-12884145,12884265-12884333,
12884899-12885054,12887398-12887673
Length = 370
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 259 IREGYQGMVDGGDNIEEANWSSVSSIIHKGG 351
I++ QG +G DNIE AN S + H G
Sbjct: 292 IKDVMQGKAEGADNIENANAGPDSKLNHLTG 322
>03_05_0393 - 23754652-23754768,23754868-23755437
Length = 228
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 256 FIREGYQGMVDGGDNIEEANWSSVS 330
++R Y +VD D + E NWSS++
Sbjct: 140 YVRSEYLNLVDDIDKMRELNWSSLT 164
>01_01_1155 + 9191249-9192439
Length = 396
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 109 GSATQKFIGRGSHKGKGLAVFTSGGDSQGMNAAVRSVVRMGI 234
G A + +G+GSH +A GGD G + VV + +
Sbjct: 15 GFAAKNLVGKGSHGNVYVARLVCGGDGGGGRVRKKKVVVVAV 56
>01_01_0749 -
5794140-5794346,5795445-5795558,5795856-5796008,
5796124-5796207,5796262-5796399,5796500-5796598
Length = 264
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 221 TTDRTAAFIP*ESPPLVNTASPLPL*EPR 135
TT TA P P ++ ASPLPL PR
Sbjct: 106 TTGATATATPAAGVPALHRASPLPLFVPR 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,864,353
Number of Sequences: 37544
Number of extensions: 285098
Number of successful extensions: 682
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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