Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A07f
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   1.3  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    26   2.3  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   4.0  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   9.3  

>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 164 LLNREYYRPWRHLAAAARDVGSSIKVDKDKFQV 262
           LLN  Y + W+ L++  + +  S   DKD  Q+
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKDVKQL 390


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 194 RHLAAAARDVGSSIKVDKDKFQVNLDVQHFAPEEI 298
           +H+     +V   ++VDK+K  ++L  +  +PE++
Sbjct: 61  KHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDV 95


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 187 SVVFPVQQRPGSDTKKIIWC*GKAKMLVQQ 98
           + VF + Q PG+D   I  C G  ++LV +
Sbjct: 661 TAVFAIMQNPGNDWDMIRACIGSKEILVPE 690


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 297 ISSGAKCCTSKFTWNLSLSTLMLEPTS 217
           I S A   TSK   N  +STL+  PTS
Sbjct: 397 IISNAYIATSKSGLNSGVSTLLASPTS 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,616,236
Number of Sequences: 5004
Number of extensions: 27523
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)