Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A07f
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452...    27   6.9  
09_06_0319 - 22293869-22293906,22294539-22295808                       27   6.9  
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702...    27   6.9  
06_03_1292 - 29064575-29064997                                         27   9.1  

>12_01_0559 +
           4527769-4527924,4528038-4528129,4528799-4528905,
           4528987-4529042,4529196-4529346,4530223-4530528,
           4530753-4531597
          Length = 570

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 204 ARWRHGL*YSLFSKGPAATLRRSSGVKAR 118
           A WRH +   LFS  PAA LRR +  ++R
Sbjct: 32  AEWRH-VRDGLFSASPAAALRRIAAWRSR 59


>09_06_0319 - 22293869-22293906,22294539-22295808
          Length = 435

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 35  KARMSLLPYFFDDFGSRRP--RRLLDQHFGLALTPDDLLSVAA 157
           K    LLP  FDD G+ +P   RL   H  L+L  DD++   A
Sbjct: 329 KMNFELLPKLFDDQGTPQPTLERLHVGHPTLSLHSDDIVCFMA 371


>02_05_0235 -
           27068516-27069032,27069697-27069788,27070056-27070289,
           27071569-27071676,27071796-27071855,27072368-27072443,
           27072550-27072710,27076919-27076981,27077061-27077148,
           27077568-27078308,27078406-27079033,27079314-27079368,
           27082073-27083527
          Length = 1425

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 180 YSLFSKGPAATLRRSSGVKARPKCWSNRRRGRLEPKSSKKY 58
           YS++S G   T+     ++ RP+ W +    + EP  S K+
Sbjct: 387 YSIYSAGRMKTVWGEDCLEFRPERWLSADGSKFEPHDSYKF 427


>06_03_1292 - 29064575-29064997
          Length = 140

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 132 GVKARPKCWSNRRRGRLEPKSSKKYGSND 46
           G    PK    RRRG+ +P ++  +G ND
Sbjct: 5   GYLLAPKKGGRRRRGKDQPSAAAHHGDND 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,218,230
Number of Sequences: 37544
Number of extensions: 207774
Number of successful extensions: 510
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)