Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A07f
(448 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 47 6e-06
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 42 2e-04
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 42 2e-04
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 41 4e-04
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 41 4e-04
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 40 0.001
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 38 0.004
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 36 0.012
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 0.90
SB_59044| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9) 27 5.3
SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 27 5.3
SB_28365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 47.2 bits (107), Expect = 6e-06
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 239 VDKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 415
+D DKFQ+ LDV+ F PEEI+ K +G I V + S++F R Y LPEG
Sbjct: 1 MDADKFQIATLDVREFKPEEITCKVENGKIKV-SGLQRHESEEGFDSKEFRRCYNLPEGV 59
Query: 416 APETVESRLA 445
++ +R+A
Sbjct: 60 DESSISTRIA 69
Score = 37.1 bits (82), Expect = 0.007
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +2
Query: 242 DKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAP 421
D KF + LDV F PEE+ VK G+ + + +RQF R + LP
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPREVDM 154
Query: 422 ETVESRL 442
+T+ RL
Sbjct: 155 DTLVPRL 161
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +2
Query: 221 VGSSIKVDKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 397
+ ++ +++ DK ++ LDV+++ PEEIS+K G I + Y + +F R Y
Sbjct: 29 LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKI-DGKHKSEGEHGYETSEFHRSY 87
Query: 398 ALPEGAAPETVESRL 442
LP+G TV SR+
Sbjct: 88 NLPDGVDVSTVSSRI 102
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 200 LAAAARDVGSSIKVDKDKFQVNLDVQHFAPE 292
+ A+ G K+D +F V LDV F+P+
Sbjct: 125 VGASTGSAGDIAKIDDKRFTVTLDVSSFSPD 155
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +2
Query: 266 LDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPETVESRLA 445
LDV+ + PEEIS K +G + V + ++F R + LPEG PE V SR++
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGIDPENVTSRIS 70
Query: 446 S 448
+
Sbjct: 71 N 71
Score = 32.7 bits (71), Expect = 0.14
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +2
Query: 236 KVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 415
K +DKF + +DV F PE I V+ ++V Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV-NANHEVEHEGHYHAMHFNRQFVLPREV 150
Query: 416 APETVESRL 442
+++ +RL
Sbjct: 151 DMDSLTTRL 159
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +2
Query: 242 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 418
+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGVE 61
Query: 419 PETVESRLAS 448
V++R+++
Sbjct: 62 ASNVKTRISN 71
Score = 30.3 bits (65), Expect = 0.76
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +2
Query: 218 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 397
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 398 ALPEGAAPETVESRL 442
LP +++ +RL
Sbjct: 146 VLPREVDMDSLTTRL 160
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 41.1 bits (92), Expect = 4e-04
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +2
Query: 242 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 418
+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGVE 61
Query: 419 PETVESRLAS 448
V++R+++
Sbjct: 62 ASNVKTRISN 71
Score = 30.3 bits (65), Expect = 0.76
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +2
Query: 218 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 397
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 398 ALPEGAAPETVESRL 442
LP +++ +RL
Sbjct: 146 VLPREVDMDSLTTRL 160
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 242 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 418
+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 61
Query: 419 PETVESRLAS 448
V++R+++
Sbjct: 62 ASNVKTRISN 71
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 248 DKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPE 424
D+ ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEAS 297
Query: 425 TVESRLAS 448
V++R+++
Sbjct: 298 NVKTRISN 305
Score = 30.3 bits (65), Expect = 0.76
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +2
Query: 218 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 397
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 398 ALPEGAAPETVESRL 442
LP +++ +RL
Sbjct: 146 VLPREVDMDSLTTRL 160
Score = 30.3 bits (65), Expect = 0.76
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +2
Query: 218 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 397
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 321 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 379
Query: 398 ALPEGAAPETVESRL 442
LP +++ +RL
Sbjct: 380 VLPREVDMDSLTTRL 394
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 242 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 418
+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 3 NENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 61
Query: 419 PETVESRLAS 448
V++R+++
Sbjct: 62 ASNVKTRISN 71
Score = 30.3 bits (65), Expect = 0.76
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +2
Query: 218 DVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 397
D G DKF + +DV F P+ I V+ ++V Y + F R++
Sbjct: 87 DGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQF 145
Query: 398 ALPEGAAPETVESRL 442
LP +++ +RL
Sbjct: 146 VLPREVDMDSLTTRL 160
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +2
Query: 242 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 418
+++K ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 62
Query: 419 PETVESRLAS 448
V++R+++
Sbjct: 63 ASNVKTRISN 72
Score = 31.1 bits (67), Expect = 0.43
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +2
Query: 224 GSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYAL 403
G+ + DKF + +DV+ F PE I V+ ++V Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFIL 147
Query: 404 PEGAAPETVESRL 442
P +++ +RL
Sbjct: 148 PREVDMDSLTTRL 160
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 36.3 bits (80), Expect = 0.012
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +2
Query: 209 AARDVGSSIKVDKDKFQVNLDVQHFAPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFV 388
A ++ S+ D KF + LDV F PEE+ VK G+ + + +RQF
Sbjct: 13 ATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFN 71
Query: 389 RRYALPE 409
R + LP+
Sbjct: 72 RHFVLPQ 78
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 27.1 bits (57), Expect(2) = 0.90
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2
Query: 282 KCCTSKFTWN 253
KCCTS +TWN
Sbjct: 1829 KCCTSNYTWN 1838
Score = 21.4 bits (43), Expect(2) = 0.90
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = -2
Query: 279 CCTSKFTWNL 250
CCT ++ WN+
Sbjct: 1860 CCTHEYGWNI 1869
>SB_59044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 157 GSDTKKIIWC*GKAKMLVQQTARASRAKIIEEIW*QRHSCFLLKIT 20
G++ + WC + LV TA + A I + W Q + FL+ I+
Sbjct: 30 GANNSQYYWCQKQPVFLVPITASITGASIRQYFWCQYQAVFLVPIS 75
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 157 GSDTKKIIWC*GKAKMLVQQTARASRAKIIEEIW*QRHSCFLLKIT 20
G++ + WC + +LV +A S A + W Q+ FL+ IT
Sbjct: 5 GANISQYYWCQYQPVLLVPISASISGANNSQYYWCQKQPVFLVPIT 50
>SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9)
Length = 219
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +3
Query: 330 WKASTKR-RKTSTGIFQGSSSDVTRCLKAR 416
WK S +R R+T+TGI Q +S+ +T+ L+ +
Sbjct: 35 WKNSVQRARRTATGINQRNSNLITQTLREK 64
>SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 1597
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Frame = -2
Query: 159 PAATLRRSSGVKARPK-----CWSNRRRGRLEPKSSK 64
PA+TLRRS+ +K P CW+ PK+SK
Sbjct: 1313 PASTLRRSTRLKTTPTHLKDYCWTKHVARASVPKNSK 1349
>SB_28365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 157 GSDTKKIIWC*GKAKMLVQQTARASRAKIIEEIW*QRHSCFLLKIT 20
G++ ++ WC +A +LV +A S A I + W Q L+ I+
Sbjct: 151 GANIRQYYWCQYQAVLLVPISASISGANISQYYWCQYQPVLLVPIS 196
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 157 GSDTKKIIWC*GKAKMLVQQTARASRAKIIEEIW*QRHSCFLLKIT 20
G++ + WC +A +LV +A + A I + W Q L+ IT
Sbjct: 101 GANISQYYWCQYQAVLLVPISASITGANISQYYWCQYQPVLLVPIT 146
>SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 446 MPVAIPQSQAPRLQAARNVGRTALKYTRAR-LSSLRACLP 330
+P P+S +PR+ A G L+ T R LSS++ +P
Sbjct: 86 VPPRPPKSWSPRIYEATRYGNVCLQDTSKRILSSIKTLIP 125
>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 306 FTEISSGAKCCTSKFTWNLSLST 238
F I SGA+ CTS WN +LS+
Sbjct: 67 FDLIGSGARFCTSGGVWNGTLSS 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,385,009
Number of Sequences: 59808
Number of extensions: 213817
Number of successful extensions: 554
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -