Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 55 6e-09
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 46 3e-06
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 42 6e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 41 1e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 40 2e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 39 4e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 0.001
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.006
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.026
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 33 0.026
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 33 0.026
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 33 0.034
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 32 0.045
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 32 0.045
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.079
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.10
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.14
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.32
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 29 0.56
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 27 1.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.2
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 3.9
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr... 25 5.2
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 25 5.2
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 25 5.2
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 6.8
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 25 6.8
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 6.8
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 25 6.8
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 6.8
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 9.0
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 25 9.0
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 25 9.0
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 25 9.0
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 9.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 9.0
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 25 9.0
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 9.0
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 9.0
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 55.2 bits (127), Expect = 6e-09
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES------------N 144
V Y HE A+KA N +GK L V A E + + E N
Sbjct: 306 VNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVN 365
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303
L+I NL ++ ERL FS FG IT++++ S+G GFVCY T ++A A+ MN
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Score = 52.8 bits (121), Expect = 3e-08
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
V + ED EKA N L++G+ ++ ++ +P + K T N++I NL P +
Sbjct: 126 VNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLR---KMGT-GNVFIKNLDPAIDN 181
Query: 181 ERLNTLFSPFGNITNSRVS-------QGIGFVCYETRQQAEDAIKHMNG 306
+ L+ FS FG I + +V+ +G GFV +++ + A AI+H+NG
Sbjct: 182 KALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNG 230
Score = 46.8 bits (106), Expect = 2e-06
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPE--NKVSHKPDTESNLYISNLPPDM 174
V ++ E A A NG+L+ K + V + E +KV +N+YI NL ++
Sbjct: 213 VHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEI 272
Query: 175 TLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303
T + + LF FG IT+ + +G GFV Y + A+ A+ +N
Sbjct: 273 TEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 46.0 bits (104), Expect = 3e-06
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Frame = +1
Query: 19 EDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES-NLYISNLPPDMTLERLNT 195
E+ + A + + + G + SFA + ++ DTES NLYISNLP ++T
Sbjct: 345 EEEKSALICISAMTLCG--YQCSFAKESFSARLQSLQDTESTNLYISNLPLHWNESDIST 402
Query: 196 LFSPFGNITN------SRVSQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGAVIVKF 348
LF P I+N S+G+GF + R+ AED I N P + ++F
Sbjct: 403 LFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKFNNFVLDPALPPLQIRF 459
Score = 35.1 bits (77), Expect = 0.006
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Frame = +1
Query: 97 LNPENKVSHKPDTES--NLYISNLPPDMTLERLNTLFSPFGNITNSR--------VSQGI 246
++ +NK S+ T N+YI LPP+ + E L + FG +++S+ + +G
Sbjct: 280 MSHDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGY 339
Query: 247 GFVCYETRQQAEDAIKHM 300
GF C+E + A I M
Sbjct: 340 GFACFEEEKSALICISAM 357
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 41.9 bits (94), Expect = 6e-05
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 133 TESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
+E+ L++ +PP T E + F +G I + ++ G GFV E + A D + G+
Sbjct: 2 SETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGK 60
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +1
Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVC 258
P++ + ++L++S + M + L +FS FG +T+ R+ S+G GF+
Sbjct: 89 PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLS 148
Query: 259 YETRQQAEDAIKHMNGQ 309
+ T ++A AI ++N Q
Sbjct: 149 FSTVEEATSAIDNLNSQ 165
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.9 bits (89), Expect = 2e-04
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--SQGIGFVCYETRQQ 276
P + + +++ L +++ + L F PFG I N ++ +G GFV Y +
Sbjct: 285 PNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSA 344
Query: 277 AEDAIKHMNG 306
AE AI M G
Sbjct: 345 AEKAINTMQG 354
Score = 29.9 bits (64), Expect = 0.24
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGK--TLKVSFAL---LNPENKVSHKPDTESNLYISNLP 165
V++ AE+A +N ++ G T K+++A + N VS P E ++++ +L
Sbjct: 133 VQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDP--EFSIFVGDLL 190
Query: 166 PDMTLERLNTLF-SPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
P L F S + + T++++ S+ GFV + + ++ + A+ HM G
Sbjct: 191 PTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQG 246
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 39.1 bits (87), Expect = 4e-04
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Frame = +1
Query: 115 VSHKPDTESNLYISNLPPDMTL--ERLNTLFSPFGNIT--------NSRVSQGIGFVCYE 264
+ + P SNLY+ NL + +L LFSPFG+I NS +S+G GFV +
Sbjct: 374 IPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR 433
Query: 265 TRQQAEDAIKHMNG 306
+ A A +NG
Sbjct: 434 QIEAAVRAKDTLNG 447
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.5 bits (83), Expect = 0.001
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Frame = +1
Query: 82 VSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI-------------T 222
++ L+ +NK S K E ++Y+ NLP L+ LF PFGN T
Sbjct: 2 IALEKLSEKNKRSTKK-CEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKST 60
Query: 223 NSRVSQGIGFVCYETRQQAEDAIKHMNG 306
+S+ F+ +E + A++AI +NG
Sbjct: 61 DSKSPTLFAFITFENKCSADNAIASLNG 88
Score = 32.7 bits (71), Expect = 0.034
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Frame = +1
Query: 142 NLYISNLPPDMT--LERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAI 291
NL++ NL ++ ++L LFS FG I + + +S+G GFV + +A AI
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 292 KHMNG 306
+NG
Sbjct: 480 NTLNG 484
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSF 90
+ +E A+ A A+ NG QG TLKV +
Sbjct: 71 ITFENKCSADNAIASLNGSSFQGNTLKVEY 100
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.1 bits (77), Expect = 0.006
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Frame = +1
Query: 16 HEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES---------NLYISNLPP 168
HED+ +A A +G + G + V K + L +SN+
Sbjct: 290 HEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHF 349
Query: 169 DMTLERLNTLFSPFGNI-------TNSRVSQGIGFVCYETRQQAEDAIKHMNG 306
++T E + +F PFG+I + S+G G++ Y A +A++ MNG
Sbjct: 350 NLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNG 402
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.1 bits (72), Expect = 0.026
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +1
Query: 121 HKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQA 279
H P ++ +Y+ NLP + L LF+ G++ +R+ S+G G V +E A
Sbjct: 275 HGPCSDC-IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDA 333
Query: 280 EDAIKHMNG 306
+I+ +NG
Sbjct: 334 ASSIEKLNG 342
Score = 29.1 bits (62), Expect = 0.42
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Frame = +1
Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIK 294
E +Y+ NL + L GN+ N + S+G + Y T ++A AIK
Sbjct: 65 ERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIK 124
Query: 295 HMNGQ 309
++ Q
Sbjct: 125 TLSNQ 129
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 33.1 bits (72), Expect = 0.026
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSF------ALLNPENKVSHKPDTESNLYISNL 162
VE++ A A A NG ++ G L++ A + S KP + + I NL
Sbjct: 670 VEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKP-KGTKILIKNL 728
Query: 163 PPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIK 294
P + T + + +L +G + + RV ++G F + T ++A +A++
Sbjct: 729 PFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMR 779
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 133 TESNLYISNLPPDMTLERLNTLFSPFGNI 219
+++ L + N P + E L +LFSPFG +
Sbjct: 504 SDNVLLVKNFPYGTSAEELTSLFSPFGEL 532
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 33.1 bits (72), Expect = 0.026
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 109 NKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSR 231
+++S + ++NLY++N PP + LFS +GN+ + R
Sbjct: 656 HEISVQIHVDTNLYVTNFPPTYDELDITKLFSAYGNVVDVR 696
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 121 HKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219
H+ E + ++NLP D++ L F GNI
Sbjct: 584 HRNREELTVLVTNLPSDISENELKIFFKDCGNI 616
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 32.7 bits (71), Expect = 0.034
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
D++ +YISNLP ++ +++ L PFG++ + ++ S+G F ++ AE
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 286 AIKHMNGQ 309
AI ++G+
Sbjct: 367 AISGLDGK 374
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 32.3 bits (70), Expect = 0.045
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFS-PFGNITNSRVSQGIG---FVCYETRQQAEDAIKHMNG 306
+ +Y+ NLPP + E L LFS G ++G G FV +E A +A+K++ G
Sbjct: 426 NTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQG 485
Query: 307 QC 312
C
Sbjct: 486 VC 487
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 32.3 bits (70), Expect = 0.045
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGN-------ITNSRVSQGIGFVCYETRQQAEDAIKHMN 303
LY++ M L F PFG I +R S+ FV YE + AEDA ++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 304 GQCPIPGAGAVIVKF 348
G+ G G + V++
Sbjct: 69 GRRLERGGGVLRVEW 83
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 31.5 bits (68), Expect = 0.079
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Frame = +1
Query: 52 GLLMQGKTLKVSFALLNP--ENKVSHKPDTES--NLYISNLPPDMTLERLNTLFSPFGNI 219
G + G+ LK++FA +P E+ + +T + N++I NLP + + F FG I
Sbjct: 266 GFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKI 325
Query: 220 TNSRV--SQGIGFVCYETRQQAEDAIK 294
+ ++ + I FV + DAIK
Sbjct: 326 EHIKILSKKNIAFVHF---LNIRDAIK 349
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.1 bits (67), Expect = 0.10
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +1
Query: 49 NGLLMQGKTLKVSFALLN---PEN-KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGN 216
+GL+++ + LK+ + + P N ++ N+YI N +T+ERL F FG
Sbjct: 380 HGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGE 439
Query: 217 I--TNSRVSQGIGFVCYETRQQAEDAI 291
I N + FV + + A +AI
Sbjct: 440 IEYVNFFREKNCAFVNFTSLASAINAI 466
Score = 27.5 bits (58), Expect = 1.3
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Frame = +1
Query: 16 HEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES----NLYISNLPPDMTLE 183
H A AA L ++G +KV + + N +S N+++ NLP +T +
Sbjct: 161 HATAFFQDAALKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITED 220
Query: 184 RLNTLFSPFGNITNSRV--SQGIGFVCYETRQQAEDAIKHM 300
+ PFG I ++ + I FV + A A++ +
Sbjct: 221 EIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.14
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 52 GLLMQGKTLKVSFALLNPE-NKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219
G+ G+ S +N + N+ S P+ + +++SN+ P +T E+L F FG +
Sbjct: 64 GIPKSGRPFLKSLQTINYDYNENSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEV 120
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 29.5 bits (63), Expect = 0.32
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNI 219
LY+SNLP + ++ LFS +GN+
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNV 26
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 28.7 bits (61), Expect = 0.56
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNI----TNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
L+++NLP + L LFS G++ T+S + GI V + +QA A K + Q
Sbjct: 197 LFVTNLPRIVPYATLLELFSKLGDVKGIDTSSLSTDGICIVAFFDIRQAIQAAKSLRSQ 255
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 95 SSTLRTKSATSPTPNPTCTSAIYHQT*PSKDSTLFSVLSVTSRIAA 232
+ST KSA SP PNP +++ + + ST+ S T +AA
Sbjct: 77 TSTSTPKSAASPAPNP--PASVPEKKVEAPSSTVAESTSTTQTVAA 120
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 2.2
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Frame = +1
Query: 124 KPDTESN----LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYET 267
KP +SN +++ L ++ + L F +G I +RV S+G G+V +ET
Sbjct: 254 KPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET 313
Query: 268 RQQAEDAIKHMNGQCPIPG 324
+ A+ A+ NG I G
Sbjct: 314 PEAAKAAVA-ANGTKEIDG 331
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 133 TESNLYISNLPPDMTLERLNTLFSPFGNITNSRVS 237
+E+N +SN PP +T+E N PF S +S
Sbjct: 190 SENNPRVSNEPPRVTIE--NASLKPFSGYIKSHMS 222
>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 114
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 28 EKARAAFNGLLMQGKTLKVSFALLNPENKV 117
E + A NGLL Q K L+ F +NK+
Sbjct: 80 EGIQTAMNGLLDQYKQLEAEFQKFQKDNKI 109
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNI 219
+Y+S +PP M +L + S +G I
Sbjct: 124 IYLSRIPPYMAPNKLRQILSQYGKI 148
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -1
Query: 137 SVSGLWLTLFSGLRSANDTFSVLPCISR 54
SV+ W++LFS ++S+ D + C+++
Sbjct: 171 SVAQYWVSLFSNVQSSLDDLFSIACLTK 198
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 109 NKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNS 228
++ S P +YI LP D+T++ + +F G I +
Sbjct: 100 SEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKN 139
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 97 LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGF 252
++P KVS P ++ Y S LP D L + G RVS+ I F
Sbjct: 575 VDPLLKVSIIPRAQALGYASYLPKDQYLMSRGQILDQMGMALAGRVSEEIFF 626
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 387 RSRSIFICVRFIRKLDDDGTRSRYWALSVHVFY 289
R+++IF + +L DD T +W V +FY
Sbjct: 1094 RNKTIFRILYEYIQLSDDHTLDDFWKTPVPIFY 1126
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 118 SHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 234
+H E+ L++ L P E L +FS FG I + +V
Sbjct: 237 AHVAPPENVLFVCKLNPVTQDEDLELIFSRFGKIISCQV 275
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 136 ESNLYISNLPPDMTLERLNTLF 201
ES + +SNLP D+T ++ LF
Sbjct: 54 ESKIIVSNLPTDVTEAQVKELF 75
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 235 SQGIGFVCYETRQQAEDAIKHMNGQC 312
S G GFV + + + A DA+ NG C
Sbjct: 285 STGTGFVLFASHEDAADALA-FNGYC 309
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFN 51
+ YEKH DA+ +R A+N
Sbjct: 1 MSYEKHSDAKASRYAWN 17
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFG-----NITNSR---VSQGIGFVCYETRQQAEDAIKHM 300
+YI NL D+ + + +FS FG N+ + S+G F+ YE ++ A+ +M
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 70 KTLKVSFALLNPENKVS-HKPDTESNLY-ISNLPPDMTLER 186
KTL V + + N++ + +T L +S LPP MTLE+
Sbjct: 181 KTLPVCYLICELANRILVYDTNTFECLQDVSTLPPSMTLEK 221
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 9.0
Identities = 23/87 (26%), Positives = 40/87 (45%)
Frame = +2
Query: 95 SSTLRTKSATSPTPNPTCTSAIYHQT*PSKDSTLFSVLSVTSRIAACHKVSALFATRPGN 274
SS +R + TS T + + SK+ST S + V + VSA RPG+
Sbjct: 234 SSVVRPPTRTSTTRPLSRVNVTNASGSISKNSTSPSKVKVNASTKIVRPVSAAQTVRPGS 293
Query: 275 RPKMQ*NT*TDNAQYRERVPSSSSLRI 355
R + N+ ++ + S+S++R+
Sbjct: 294 RIFRE-NSASNTQRPNVSATSNSTVRV 319
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +1
Query: 67 GKTLKVSFALLNPENKVSHK-PDTESNL----YISNLPPDMT-LERLNTLFSPFGNITNS 228
G ++ ++ + N H DTES L +I + +T + ++TL +PFGN +NS
Sbjct: 96 GYAPSITRSIKSISNNTEHLGADTESYLSANDFIDSTSEALTKIVDVDTLSAPFGNDSNS 155
Query: 229 R 231
R
Sbjct: 156 R 156
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 519 SGISARSERCTNISTVE 469
SG+SAR ++C I+T+E
Sbjct: 1136 SGVSARKKKCVLIATLE 1152
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 235 SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGAVI 339
S+ IG VC + + D + C IPG +I
Sbjct: 251 SESIGSVCSQDLKSRPDCLIVAGTSCKIPGVKRII 285
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 229 RVSQGIGFVCYETRQQAEDAIKHMNGQ 309
R +G GFV + + AI+ MNG+
Sbjct: 255 RRGRGFGFVSFANAEDQSRAIEEMNGK 281
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 234
+ E +Y+ L + L + FS FG+++N +
Sbjct: 2 ELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEI 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.132 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,300
Number of Sequences: 5004
Number of extensions: 40965
Number of successful extensions: 191
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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