Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A06f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 57 1e-08
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 53 1e-07
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 48 4e-06
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 45 4e-05
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 42 3e-04
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 42 3e-04
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 40 0.002
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 39 0.002
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 36 0.015
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 36 0.027
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 35 0.035
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 35 0.035
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 34 0.082
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.11
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 33 0.14
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 33 0.19
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 31 0.44
SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10) 31 0.76
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 30 1.0
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 30 1.0
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 29 2.3
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 29 2.3
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36) 28 5.4
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_20205| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0) 28 5.4
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 28 5.4
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_27531| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3) 27 9.4
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 75.8 bits (178), Expect = 2e-14
Identities = 50/124 (40%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
V Y+ +DA KA NG +Q KTLKVSFA + S +NLYIS LP DM
Sbjct: 73 VNYDNPDDANKAVREMNGARLQNKTLKVSFA------RPSSTEIKNANLYISGLPKDMKE 126
Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGA-V 336
E + LF PFG I S+V +G GFV ++ R +A+ AI +N + +PG +
Sbjct: 127 EEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDLNNK-TLPGTNVKL 185
Query: 337 IVKF 348
VKF
Sbjct: 186 TVKF 189
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Frame = +1
Query: 100 NPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFV 255
N E + D +NL I+ +PP M+ E + +F GN+T+ ++ S G FV
Sbjct: 14 NHEPMENGTSDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFV 73
Query: 256 CYETRQQAEDAIKHMNG 306
Y+ A A++ MNG
Sbjct: 74 NYDNPDDANKAVREMNG 90
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITN--SRVSQGIGFVCYETRQQAEDAIKHMNG 306
+++ LP + T L LFSP+G ITN ++ +G GFV ++A AI +NG
Sbjct: 274 IFVYGLPQEATPLFLYKLFSPYGAITNIELKLDKGYGFVNMSNYEEACHAICCLNG 329
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 57.6 bits (133), Expect = 6e-09
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
V+Y EDA+KA NG + K LKV+F+ +N +NLY+ N+P +
Sbjct: 93 VDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSRPGGDNTKG------ANLYVCNIPKQLPE 146
Query: 181 ERLNTLFSPFGNITNSR--------VSQGIGFVCYETRQQAEDAIKHMNG 306
F +GNI N R + +G GFV Y+ + +A+ AI ++G
Sbjct: 147 AEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSLSG 196
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Frame = +1
Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
++++ L ++ +P DMT + +F ++ N ++ S G GFV Y T + A+
Sbjct: 44 ESKTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQK 103
Query: 286 AIKHMNG 306
AI +NG
Sbjct: 104 AIDKLNG 110
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 56.8 bits (131), Expect = 1e-08
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES------------N 144
V +E E+AE+A NG + G+ L A E K + E N
Sbjct: 154 VSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVN 213
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303
LYI NL + ERL FSP+G I++++V S+G GFVC+ + ++A A+ MN
Sbjct: 214 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMN 273
Query: 304 GQ 309
G+
Sbjct: 274 GR 275
Score = 52.4 bits (120), Expect = 2e-07
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 9/107 (8%)
Frame = +1
Query: 16 HEDAEKARAAFNGLLMQGKTLKVSFALLNPEN--KVSHKPDTESNLYISNLPPDMTLERL 189
H+ A +A A +G+L+ K + V + E K+ +P +N+Y+ N DM E++
Sbjct: 66 HDAALEAIARVDGMLLNDKKVFVGRWMSKKERIEKMGTQPKKFTNVYVKNFGDDMDDEQM 125
Query: 190 NTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQ 309
+ + G I + +V S+G GFV +ET ++AE+A+ +NG+
Sbjct: 126 KEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGK 172
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 97 LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGI 246
+NP ++ P ++LY+ +L PD+T L FS G++ + RV + +
Sbjct: 1 MNPSTGAANYPI--ASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDL 48
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 53.2 bits (122), Expect = 1e-07
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPE-----NKVSHKPDTESNLYISNLP 165
VEY+ E A+ A NG+L+ G+ +KV P+ + + + +YI+++
Sbjct: 148 VEYDLPEAAQLALEQMNGVLLGGRNIKVGRPSNVPQAAPLIEQFEQEAKKYARIYIASVH 207
Query: 166 PDMTLERLNTLFSPFGNITNSRVSQ--------GIGFVCYETRQQAEDAIKHMN 303
PD+ + + ++F FG + + +S+ G GF+ YE +Q A DAI MN
Sbjct: 208 PDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMN 261
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Frame = +1
Query: 91 ALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGI 246
A+L E+ + PD SNL+I +LP + T L F PFG + +++V S+
Sbjct: 262 AVLLKESHYTPGPDG-SNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCF 320
Query: 247 GFVCYETRQQAEDAIKHMNG 306
GFV Y+ A++AI+HMNG
Sbjct: 321 GFVSYDNVMSAQNAIQHMNG 340
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 44.8 bits (101), Expect = 4e-05
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKH 297
+NLYI NLP + L +FS +G + ++R+ S+G+GF E+ ++ E IK
Sbjct: 179 TNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKD 238
Query: 298 MNGQCPIPGA-GAVIVKF 348
N + +PG ++VKF
Sbjct: 239 FNKKM-LPGCIQELVVKF 255
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 43.2 bits (97), Expect = 1e-04
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALL--NPE-------NKVSHKPDT-ESNLY 150
V + + EDA KA A + + + GK +K ++A NP + V H+ + +Y
Sbjct: 559 VSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNNPTQTKPLVWDDVFHQSSQLNTTVY 618
Query: 151 ISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETR 270
+ NLPPD+ L +FS +G+I ++V G+ R
Sbjct: 619 VGNLPPDVKDYELQQMFSQYGSILETKVFADKGYAFINAR 658
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDM 174
VE+E H DA++A+ + + K LKV++A +P K + DT + ++++ +L ++
Sbjct: 413 VEFETHADAQEAKFRMDQRTVMDKKLKVNWATNHPGMK---RGDTNNHFHIFVGDLAENV 469
Query: 175 TLERLNTLFSPFGNIT 222
L F PFG I+
Sbjct: 470 DNALLRKTFEPFGEIS 485
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 41.9 bits (94), Expect = 3e-04
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
V Y+ E+A +A A+ NG + G ++V A N +H D + +++I NLP D+
Sbjct: 17 VVYKAAENANQAIAS-NGEEIDGFHIRVDLA----SNDKAH--DHQRSVFIGNLPFDIEE 69
Query: 181 ERLNTLFSPFGNITNSR--------VSQGIGFVCYETRQQAEDAIKHMNGQ 309
E L LF+ GN+ + R + +G G+V +E++ A+K N +
Sbjct: 70 EPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAE 120
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 41.9 bits (94), Expect = 3e-04
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
VE+ EDA+ A N + + GK ++V+ A + +N D +NL+I NL ++
Sbjct: 59 VEFLGEEDADYAIKVMNMIKVYGKPIRVNKASAHNKNL-----DVGANLFIGNLDTEVDE 113
Query: 181 ERLNTLFSPFGNI---------TNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
+ L FS FG I +++ S+G F+ + + ++ AI+ MNGQ
Sbjct: 114 KLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQ 165
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +1
Query: 142 NLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNG 306
++Y+ N+P M+ +L +F+ +G I R + GFV + R+ A AI +NG
Sbjct: 3 SIYVRNVPLPMSETQLKAVFTKYGQIEKVRKIRDYGFVYFAKRESAVQAIDGING 57
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Frame = +1
Query: 52 GLLMQGKTLKVSFALLNPENKVSHKPDTESN-LYISNLPPDMTLERLNTLFSPFGNI--- 219
G+ GK ++ ++ + +SHK + + +YI + PD+ L ++F P+G I
Sbjct: 36 GMCAIGKLAEIQHSI---QELLSHKEEHDQRTIYIRDFRPDIRKSSLESVFGPYGAIEDL 92
Query: 220 ----TNSRVSQGIGFVCYETRQQAEDAI 291
T + S+G G+V YE + A+ A+
Sbjct: 93 SIIRTQTGKSKGFGYVTYENAESAQRAL 120
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Frame = +1
Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNI-----TNSRV---SQGIGFVCYETRQQAEDA 288
ES L++ NLP + T + L SP+GNI S V S+G GFV Y TR+ A A
Sbjct: 112 ESLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQA 170
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSF 90
V+Y E+AEK + A NG ++G ++V++
Sbjct: 252 VDYATAEEAEKGQRAHNGRQVEGSNIRVAY 281
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 36.3 bits (80), Expect = 0.015
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 94 LLNPENKVSHKPDTESNLYIS--NLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYET 267
++ +V P + YI LP D+ + +G I + + +G GFV ++
Sbjct: 672 IIQDGGRVMRTPCFRAGKYIKAYRLPRDVRESDVEKFLRGYGKIRDISLKRGYGFVEFDD 731
Query: 268 RQQAEDAIKHMNGQ 309
+ AEDA+ +NG+
Sbjct: 732 HRDAEDAVHDLNGR 745
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 35.9 bits (79), Expect = 0.020
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Frame = +1
Query: 184 RLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
RL F PFG + +++V S+ GFV Y+ A++AI+HMNG
Sbjct: 277 RLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNG 325
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 91 ALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 234
A+L E+ + PD SNL+I +LP + T L F PFG + +++V
Sbjct: 214 AVLLKESHYTPGPDG-SNLFIYHLPQEFTDADLMQTFQPFGTVISAKV 260
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 139 SNLYISNLPPDMT---LERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
S +YI N+ + + +ER F P ++ +R G F +E R+ AEDA++ ++G+
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGR 61
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 35.5 bits (78), Expect = 0.027
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
+Y+ LP T + + F +G + + + GFV +E + A+DA+ NG+
Sbjct: 5 VYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNNYGFVEFEDDRDADDAVYECNGK 59
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 35.1 bits (77), Expect = 0.035
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITN---SRVSQGIGFVCYETRQQAEDAIKHMNG 306
+ LY+ NL + L F FG ++ +R G FV YE + AE+A++ ++G
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDG 62
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 93
VEYE + DAE+A +G + +T++V F+
Sbjct: 45 VEYEDYRDAEEAVRELDGANVCDRTIRVEFS 75
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +1
Query: 109 NKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVS--QGIG----FVCYETR 270
+ ++ + +Y+ NLP D+ + L+ +F +G+I + + +G G FV +E
Sbjct: 251 SNMNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDP 310
Query: 271 QQAEDAIKHMNG 306
+ AEDA+K +G
Sbjct: 311 RDAEDAVKGRDG 322
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 33.9 bits (74), Expect = 0.082
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Frame = +1
Query: 100 NPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFV 255
+P + + LY+++L ++ + + +FS +G + + +S+G +V
Sbjct: 1144 SPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYV 1203
Query: 256 CYETRQQAEDAIKHMNG 306
Y ++ E A+KHM+G
Sbjct: 1204 EYVDPEECEKALKHMDG 1220
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIG 249
P K KP+ ++I LP + +N +F G IT+ R+S+G G
Sbjct: 339 PMQKQKEKPEGCRTVFIGGLPESINEHIINEIFYVCGEITSIRISKGKG 387
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Frame = +1
Query: 124 KPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQA 279
+P + LY+ +L ++T + +F PFG + + ++ S+G GFV + + A
Sbjct: 237 QPLGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAA 296
Query: 280 EDAIKHMNG 306
+ A++ MNG
Sbjct: 297 KRAMEQMNG 305
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYIS 156
VEYE ++A+ A A NG M G+ + V +A + +K S ++L +S
Sbjct: 339 VEYETFKEAQSALEALNGAEMLGQNISVDWAFIRGPSKKSRSLQAVTSLPLS 390
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS--------QGIGFVCYETRQQAEDAIKHM 300
L+++N+ + + ++ LFS +G I N V+ +G V YET ++A+ A++ +
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354
Query: 301 NG 306
NG
Sbjct: 355 NG 356
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 145 LYISNLPPD-MTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
++I NL D + + L +FS G + + GFV +ET + A++A+ +G+
Sbjct: 48 IFIGNLATDKIARQDLEEIFSRHGKVLGCSLHANFGFVQFETEKGADEAVAKEHGR 103
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Frame = +1
Query: 100 NPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVC 258
NP K S+ P S ++++NL + ++L F G++ + + S+G+G V
Sbjct: 173 NPMMKKSNDP-AASTVFVTNLDYKVNWQKLKDTFKCAGHVIRAEIMEDDEKKSKGMGTVQ 231
Query: 259 YETRQQAEDAIKHMNGQ 309
+ET +A +A+ ++G+
Sbjct: 232 FETPMEAMNAVNLLHGK 248
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
+ +Y LP D L +G + + G GFV ++ + A+D + +NG+
Sbjct: 5 TRVYFGRLPRDCRERDLEKFVRGYGRVREISMKLGYGFVEFDDYRDADDCVYDLNGR 61
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Frame = +1
Query: 142 NLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKH 297
++++ N+P + + E+L +FS G + + R+ +G GF Y+ ++ A A+++
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 298 MNG 306
+NG
Sbjct: 86 LNG 88
>SB_34062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 31.1 bits (67), Expect = 0.58
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 100 NPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNIT 222
+P + H P +++ LPPD+ + ++ F FG++T
Sbjct: 331 SPNSDSEHIPRFSRKVFVGGLPPDIDEDEIHASFCRFGSLT 371
>SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10)
Length = 141
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 118 SHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ-GIGFVCYETRQQAEDA 288
S P T + + ISNL P ++ + + LF G + + ++ + G+ V Y T++ A A
Sbjct: 9 STTPQTSTRVTISNLHPAVSRQDIEELFGAIGVLKSCKMLRAGMAEVVYTTKEDAVTA 66
>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 118 SHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ-GIGFVCYETRQQAEDA 288
S P T + + ISNL P ++ + + LF G + + ++ + G+ V Y T++ A A
Sbjct: 214 STTPQTSTRVTISNLHPAVSRQDIEELFGAIGVLKSCKMLRAGMAEVVYTTKEDAVTA 271
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Frame = +1
Query: 148 YISNLPPDMTLERLNTLFSPFGNITNSRVS--------QGIGFVCYETRQQAEDAIKHMN 303
Y+ L ++ + L+ F PFG+IT+ ++ +G GFV +E + AI +MN
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 397 SGVGAPPIAYNGATAGFN---GSTPAAFNGTNISAAFGARAYAT 519
S +G+PP+ Y + AG+N S P++ N S F +++ AT
Sbjct: 375 SDLGSPPLGYKSSQAGYNAGQSSVPSSGNPPGSSGLFRSQSGAT 418
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = +1
Query: 88 FALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV------SQGIG 249
FALL + S K ++I L + T E L FS +G I + + S+G G
Sbjct: 36 FALLPSKMSESEKL---RKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFG 92
Query: 250 FVCYETRQQAEDAIK 294
FV YE+ + +K
Sbjct: 93 FVTYESSDSVNEVLK 107
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Frame = +1
Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAI 291
L++SNLP D + LFS G + R+ +G G+V YE A A+
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAV 228
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
+ +Y+ LP + + F +G I + G GFV ++ AEDA+ NG+
Sbjct: 3 NRVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDGYGFVEFDYSDDAEDAVYECNGK 61
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 172 MTLERLNTLFSPFGNI--TNSRVSQGIGFVCYETRQQAEDAIKHMNG 306
+T E L F+ G++ N ++ GFV ++T + A+ AI MNG
Sbjct: 119 LTEEILKEEFNHLGHVERVNFEKNRSQGFVTFDTWEAADKAIDEMNG 165
>SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)
Length = 454
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = -1
Query: 197 RVLSLSRVMSGGKLLMYR-LDSVSGLWL-TLFSGL 99
R+ LSR SG ++L+Y L S++ LW+ LF+G+
Sbjct: 262 RIFKLSRYSSGMRVLLYTFLMSLNELWMFMLFAGM 296
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 235 SQGIGFVCYETRQQAEDAIKHMNGQ 309
S+G GFV + + A+ A+K +NG+
Sbjct: 98 SRGFGFVTFANPEDAQTAVKSLNGK 122
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVS 87
V + EDA+ A + NG +QG+TLK++
Sbjct: 104 VTFANPEDAQTAVKSLNGKEVQGRTLKIA 132
>SB_20205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 73 TLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ 240
T+++ L N + + DTE + NL P + + N + F ITN+R+ +
Sbjct: 7 TIELEDQTLCITNIYAPRTDTERKQFYLNLDPYLATKNYNIIGGDFNCITNTRLDK 62
>SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 890
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +2
Query: 311 AQYRERVPSSSSLRINLTQIKMLLDLRHVPAWELRRSRITEQLLGSTVLRLQLSTVLILV 490
+ Y R+ S S+ N + IK+ + + + A + R R+ LL TVLR + +LV
Sbjct: 313 SNYAWRLRSIVSVLKNRSSIKVRIPMLVIRASNVHRKRVNFPLLKPTVLRAISNMSSLLV 372
Query: 491 Q 493
Q
Sbjct: 373 Q 373
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 479 VPLKAAGVEPLNPAVAPLYAIGGAPT 402
VPL A P++PA AP G AP+
Sbjct: 959 VPLTPAATSPVSPAAAPSTTPGAAPS 984
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Frame = +1
Query: 103 PENKVSHKPDTE-SNLYISNLPPDMTLERLNTLFSPFGNIT--------NSRVSQGIGFV 255
PE K++ + +L + LP T + F+ FG I N+R S+G GFV
Sbjct: 102 PETKITKVEGVDVGDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFV 161
Query: 256 CYETRQQAEDAI 291
++ + A++ +
Sbjct: 162 RFKKDEDAKNVL 173
>SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 235 SQGIGFVCYETRQQAEDAIKHMNGQ 309
++ GFV Y R+ + AIKH+ G+
Sbjct: 249 NRNCGFVAYMRRKDGDKAIKHLTGK 273
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 27.5 bits (58), Expect = 7.1
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 22/124 (17%)
Frame = +1
Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFAL-LNP-----ENKVSH--------KPDTE 138
+E E+ +A A F+G+++QG+ LK+ P EN H PD+
Sbjct: 614 IELRSVEETTQAMA-FDGIILQGQALKIRRPKDYQPIPGMSENASVHVPGVVSTVVPDSP 672
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNI--------TNSRVSQGIGFVCYETRQQAEDAIK 294
++I LP + +++ L S FG + + + +S+G F Y + AI+
Sbjct: 673 HKIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQ 732
Query: 295 HMNG 306
+NG
Sbjct: 733 GLNG 736
>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1574
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/50 (28%), Positives = 16/50 (32%)
Frame = -3
Query: 453 TVEPSSCSVIRDRRSSHAGTCRRSRSIFICVRFIRKLDDDGTRSRYWALS 304
T P C G C C R++ D D S YW LS
Sbjct: 1460 TDNPDGCKACGCNPLGTIGECNPDTGRCTCKRYVEGEDCDRCASEYWGLS 1509
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Frame = +1
Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
S ++I +P D + L +F G+I + R+ ++G F + + +A++A+K
Sbjct: 152 SQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVK 211
Query: 295 HMNGQCPIPG 324
++ + PG
Sbjct: 212 KLDNKEIRPG 221
>SB_27531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 221 VMLPKGLKRVLSLSRVMSGGKLLMYRLDSVSGLWLTLFSGLRSAND 84
+++P G V+S S+ + G +L + G+ + FSG+ + ND
Sbjct: 78 LIIPDGSDAVISFSKFKTEGCCDYVKLTTQEGVLIGQFSGITTPND 123
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Frame = +1
Query: 124 KPDTESNLYISNLPPDMTLERLNTLFSPFG----NITNSRVSQ---GIGFVCYETRQQAE 282
K E YI NL + L FS + + + R +Q G FV + +++ E
Sbjct: 225 KMGEECKCYIGNLDFKVNEADLQDRFSRYDVVDVQVISDRETQRPRGFAFVTFGSKKNME 284
Query: 283 DAIKHMNGQ 309
DAI ++GQ
Sbjct: 285 DAINELDGQ 293
>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
Length = 532
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -2
Query: 184 FRGSCLV-VNC*CTGWIRCRACG 119
FRG C V N +GW RC CG
Sbjct: 244 FRGCCRVNCNWYWSGWSRCTGCG 266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.132 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,393,504
Number of Sequences: 59808
Number of extensions: 350757
Number of successful extensions: 1066
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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