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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)...    56   1e-08
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi...    56   2e-08
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    56   2e-08
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative...    54   4e-08
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ...    54   4e-08
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)       54   4e-08
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative...    52   2e-07
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    52   3e-07
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative...    51   5e-07
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ...    50   1e-06
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ...    48   3e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ...    48   3e-06
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative...    48   3e-06
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t...    47   9e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    46   2e-05
At5g51300.2 68418.m06360 splicing factor-related contains simila...    46   2e-05
At5g51300.1 68418.m06359 splicing factor-related contains simila...    46   2e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ...    45   3e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat...    45   4e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat...    45   4e-05
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t...    44   8e-05
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t...    44   8e-05
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t...    44   8e-05
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t...    44   8e-05
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ...    43   1e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ...    43   1e-04
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ...    43   1e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ...    43   1e-04
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ...    43   1e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ...    43   1e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ...    43   1e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat...    42   2e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ...    42   3e-04
At4g16280.3 68417.m02471 flowering time control protein / FCA ga...    42   3e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga...    42   3e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ...    42   3e-04
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative      41   4e-04
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ...    41   6e-04
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ...    40   0.001
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ...    40   0.001
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ...    40   0.001
At5g06000.1 68418.m00665 eukaryotic translation initiation facto...    40   0.001
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ...    40   0.001
At3g11400.1 68416.m01390 eukaryotic translation initiation facto...    39   0.002
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p...    39   0.002
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    38   0.003
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS...    38   0.003
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t...    38   0.003
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ...    38   0.004
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ...    38   0.004
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              38   0.005
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative...    38   0.005
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ...    37   0.007
At1g27050.1 68414.m03298 homeobox-leucine zipper family protein ...    37   0.009
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ...    36   0.012
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ...    36   0.012
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS...    36   0.012
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS...    36   0.012
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ...    36   0.012
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    36   0.017
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    36   0.017
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)...    36   0.017
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)...    36   0.017
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ...    36   0.022
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ...    36   0.022
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    36   0.022
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    36   0.022
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP...    35   0.029
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP...    35   0.029
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP...    35   0.029
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ...    35   0.038
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP...    35   0.038
At2g47310.1 68415.m05906 flowering time control protein-related ...    35   0.038
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS...    34   0.067
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS...    34   0.067
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ...    34   0.067
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative...    33   0.088
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ...    33   0.088
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ...    33   0.088
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ...    33   0.12 
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ...    33   0.12 
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ...    33   0.12 
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil...    33   0.12 
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /...    33   0.15 
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /...    33   0.15 
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat...    33   0.15 
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat...    33   0.15 
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    33   0.15 
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    32   0.20 
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR...    32   0.20 
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    32   0.20 
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR...    32   0.20 
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    32   0.20 
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ...    32   0.27 
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t...    32   0.27 
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p...    31   0.47 
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    31   0.47 
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil...    31   0.62 
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ...    31   0.62 
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ...    31   0.62 
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil...    30   0.82 
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ...    30   1.1  
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil...    30   1.1  
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    30   1.1  
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ...    29   1.4  
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein...    29   1.4  
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    29   1.4  
At4g16280.1 68417.m02469 flowering time control protein / FCA ga...    29   1.9  
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k...    29   1.9  
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id...    29   1.9  
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    29   1.9  
At1g48090.2 68414.m05363 C2 domain-containing protein contains P...    29   1.9  
At1g48090.1 68414.m05362 C2 domain-containing protein contains P...    29   1.9  
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ...    29   1.9  
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ...    29   1.9  
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)...    29   1.9  
At4g10610.1 68417.m01735 RNA-binding protein, putative                 29   2.5  
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ...    29   2.5  
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ...    28   3.3  
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide...    28   3.3  
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide...    28   3.3  
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide...    28   3.3  
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t...    28   3.3  
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ...    28   4.4  
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ...    28   4.4  
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ...    28   4.4  
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil...    28   4.4  
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f...    28   4.4  
At5g61450.1 68418.m07710 2-phosphoglycerate kinase-related conta...    27   5.8  
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ...    27   5.8  
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ...    27   5.8  
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ...    27   5.8  
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ...    27   5.8  
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ...    27   5.8  
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    27   5.8  
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33...    27   5.8  
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains...    27   7.7  
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ...    27   7.7  
At1g21312.1 68414.m02663 RNA recognition motif (RRM)-containing ...    27   7.7  

>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
           non-consensus TA donor splice site at exon 2,
           polyadenylate-binding protein - Triticum aestivum
           (common wheat),PIR:T06979
          Length = 443

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTE------------SN 144
           V +E  +DA +A  + NG     K   V  A    E +   +   E            SN
Sbjct: 74  VNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSN 133

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303
           LY+ NL P ++ E+L  +FSPFG +T+S+V       S+G GFV + T ++A +A+  ++
Sbjct: 134 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 193

Query: 304 GQ 309
           G+
Sbjct: 194 GK 195



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
 Frame = +1

Query: 55  LLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 234
           +L+  K + V   L   E   +      +N+Y+ NL    T + L   F  +G IT++ V
Sbjct: 1   MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 60

Query: 235 -------SQGIGFVCYETRQQAEDAIKHMNG 306
                  S+G GFV +E    A  A++ +NG
Sbjct: 61  MKDGEGKSKGFGFVNFENADDAARAVESLNG 91


>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
           to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
           associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
           splicing factor SF3b 49 kDa subunit) {Homo sapiens};
           contains Pfam profile PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 363

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 9/112 (8%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
           +EY   EDA+ A    N + + GK ++V+ A    ++K S   D  +NL+I NL PD+  
Sbjct: 71  IEYRSEEDADYAIKVLNMIKLHGKPIRVNKA---SQDKKSL--DVGANLFIGNLDPDVDE 125

Query: 181 ERLNTLFSPFGNI-TNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
           + L   FS FG I +N ++        S+G GF+ Y++ + ++ AI+ M GQ
Sbjct: 126 KLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQ 177



 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
 Frame = +1

Query: 118 SHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQ 273
           S + + ++ +Y+  L   ++ E L  LF   G + N        + + Q  GF+ Y + +
Sbjct: 18  SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77

Query: 274 QAEDAIKHMN 303
            A+ AIK +N
Sbjct: 78  DADYAIKVLN 87


>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 42/122 (34%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTE------------SN 144
           V +E  +DA +A  A NG     K   V  A    E +   K   E            SN
Sbjct: 269 VNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSN 328

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITN-------SRVSQGIGFVCYETRQQAEDAIKHMN 303
           LY+ NL   +T ++L   F+PFG IT+       S VS+G GFV + T ++A  AI  MN
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388

Query: 304 GQ 309
           G+
Sbjct: 389 GK 390



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
           V Y   +DA +A    N + + G+ ++V +++ +P    S +     N++I NL   +  
Sbjct: 91  VNYATPQDASRALNELNFMALNGRAIRVMYSVRDP----SLRKSGVGNIFIKNLDKSIDH 146

Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
           + L+  FS FG I + +V       S+G GFV Y+T + A+ AI  +NG
Sbjct: 147 KALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNG 195



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
           V+Y+  E A+ A    NG+L+  K + V   +   +   S +    +N+Y+ NL   ++ 
Sbjct: 178 VQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSD 237

Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQ 309
           E LN +F  FG  T+  +       S+G GFV +E    A  A+  +NG+
Sbjct: 238 EELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGK 287


>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
           PABP, putative 
          Length = 609

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFA--------LLNPENKVSHKPDTE----SN 144
           V ++  EDA +A    NG     K L V  A        LL  + K  H+        SN
Sbjct: 246 VNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSN 305

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303
           +Y+ N+   +T E L   FS  G IT++++       S+G GFVC+ T ++A DA+K  +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365

Query: 304 GQ 309
           GQ
Sbjct: 366 GQ 367



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
 Frame = +1

Query: 19  EDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTL 198
           +DA  A    N  L+ GK ++V +++  P+ +     +   N+++ NLP  +T   L  +
Sbjct: 76  QDANLAIEKKNNSLLNGKMIRVMWSVRAPDAR----RNGVGNVFVKNLPESVTNAVLQDM 131

Query: 199 FSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303
           F  FGNI + +V       S+G GFV +E    A  AI+ +N
Sbjct: 132 FKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173



 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTE-SNLYISNLPPDMT 177
           V++E+ + A  A    N  ++  K + V    +   ++V  KP+ + +NLY+ NL  D++
Sbjct: 157 VQFEQEDAAHAAIQTLNSTIVADKEIYVG-KFMKKTDRV--KPEEKYTNLYMKNLDADVS 213

Query: 178 LERLNTLFSPFGNITN-------SRVSQGIGFVCYETRQQAEDAIKHMNG 306
            + L   F+ FG I +       +R+ +G  FV ++  + A  A + +NG
Sbjct: 214 EDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNG 263


>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp29, putative similar to
           29 kDa ribonucleoprotein chloroplast precursor
           {Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) contains an AG-donor site at
           intron.
          Length = 258

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
 Frame = +1

Query: 67  GKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV---- 234
           G+ LKV+FA     NK    P+TE  L++ NL   +T E L   F   G++  +RV    
Sbjct: 153 GRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDG 212

Query: 235 ----SQGIGFVCYETRQQAEDAIKHMNG 306
               S+G GFVCY ++ + E A++ ++G
Sbjct: 213 DTGRSRGYGFVCYSSKAEMETALESLDG 240


>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
          Length = 660

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTE--SNLYISNLPPDM 174
           V++EK E A+ A    NG+LM  K + V   +   E        T   +N+Y+ NLP ++
Sbjct: 181 VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEI 240

Query: 175 TLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
             + L   F  FG I+++ V       S+  GFV +E  + A  A++ MNG
Sbjct: 241 GEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNG 291



 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKH 297
           +NLY+ NL   +  E+L  +FS +GN+T+S+V       S+G GFV Y   ++A  A+  
Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSE 391

Query: 298 MNGQ 309
           MNG+
Sbjct: 392 MNGK 395



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
           + +    DA +A  A N   +  + +++  +  +P  ++S K     N++I NL   +  
Sbjct: 94  INFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGK----GNIFIKNLDASIDN 149

Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
           + L   FS FG I + +V       S+G GFV +E  + A+ AI  +NG
Sbjct: 150 KALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198


>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
           PABP, putative
          Length = 662

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
           V Y   +DAEKA    N   + GK ++++++        S +     NL++ NL   +  
Sbjct: 92  VNYSNTDDAEKAMQKLNYSYLNGKMIRITYS----SRDSSARRSGVGNLFVKNLDKSVDN 147

Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQ 309
           + L+  FS  G I + +V       S+G GFV ++T   A++AI+ +NG+
Sbjct: 148 KTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGK 197



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKV--SHKPDTES----------N 144
           V +E  EDA +A  A NG     K   V  A    E ++  S + +  S          N
Sbjct: 270 VNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLN 329

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303
           LY+ NL   +T E+L  LF+ FG IT+ +V       S+G GFV +    +A   +  MN
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389

Query: 304 GQ 309
           G+
Sbjct: 390 GK 391



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
           V+++  + A+ A    NG ++  K + V   L   E + +      +N+Y+ NL    T 
Sbjct: 179 VQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTD 238

Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQ 309
           + L T F  +G+I+++ V       S+  GFV +E  + A  A++ +NG+
Sbjct: 239 DELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGK 288


>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDM 174
           V++EK E A+ A    NG+L+  K + V   +   +   S      S  N+Y+ NLP ++
Sbjct: 177 VQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEI 236

Query: 175 TLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
           T + L   F  +G+I+++ V       S+  GFV + + + A  A++ MNG
Sbjct: 237 TDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNG 287



 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKH 297
           SNLY+ NL   +  E+L  +FS +GN+T+ +V       S+G GFV Y   ++A  A+K 
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 387

Query: 298 MNGQ 309
           MNG+
Sbjct: 388 MNGK 391



 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
           V +   EDA +A  + N   ++ + +++  +  +P  ++S K     N++I NL   +  
Sbjct: 90  VNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGK----GNVFIKNLDASIDN 145

Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
           + L   FS FG I + +V       S+G GFV +E  + A+ AI  +NG
Sbjct: 146 KALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 194


>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
           SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 537

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 18/120 (15%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPEN------KVSH----KPDTE-SNL 147
           V +   E+A+KA  +  GL +  K L V  AL   E       K S     KP+   SNL
Sbjct: 247 VNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNL 306

Query: 148 YISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
           Y+ NL   M   RL  +F  +G I +++V       S+G GFVC+   ++++ A +++NG
Sbjct: 307 YVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNG 366



 Score = 50.0 bits (114), Expect = 9e-07
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180
           V+++  + A  AR+A +G ++ GK L V+  +   E          +N+Y+ NL   +T 
Sbjct: 156 VQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTD 215

Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306
           + L+TLFS +G +++  V       S+G GFV +   + A+ A++ + G
Sbjct: 216 DCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCG 264



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES---NLYISNLPPD 171
           + ++    A  A    N   ++GK +++ ++    +  ++++  T +   NLY+ NL   
Sbjct: 67  INFDSPFSASNAMTRLNHSDLKGKAMRIMWS----QRDLAYRRRTRTGFANLYVKNLDSS 122

Query: 172 MTLERLNTLFSPFGNITNSRV------SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGA 333
           +T   L  +F PFG+I + +V      S+G GFV ++T Q A  A   ++G   + G   
Sbjct: 123 ITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSM-VYGKKL 181

Query: 334 VIVKF 348
            + KF
Sbjct: 182 FVAKF 186


>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
           similar to GB:CAB75429 (GI:6996560) from [Nicotiana
           plumbaginifolia], contains Pfam profiles: PF00076 RNA
           recognition motif (3 copies)
          Length = 427

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDM 174
           V Y     A  A  + NG  + G+ +KV++A    + +     DT S  N+++ +L P++
Sbjct: 101 VHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQRE-----DTSSHFNIFVGDLSPEV 155

Query: 175 TLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
           T   L   FS F + +++RV        S+G GFV +  +Q A+ AI  MNG+
Sbjct: 156 TDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 208



 Score = 32.3 bits (70), Expect = 0.20
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +1

Query: 127 PDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV----SQGIGFVCYETRQQAEDAIK 294
           P T  ++Y+ N+   +T   L  +F+  G + +S++        GFV Y  R+ A  AI 
Sbjct: 55  PSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAIL 114

Query: 295 HMNGQ 309
            +NG+
Sbjct: 115 SLNGR 119



 Score = 31.9 bits (69), Expect = 0.27
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQ--GIGFVCYETRQQAEDAIKHMNG 306
           + +Y+ NL P++T   L+  F   G   I   RV +  G GFV Y T  +A  AI+  N 
Sbjct: 265 TTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNT 324

Query: 307 Q 309
           Q
Sbjct: 325 Q 325


>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 289

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
 Frame = +1

Query: 19  EDAEKARAAFNGLLMQGKTLKVSFAL---LNPENKVSHKPDTESNLYISNLPPDMTLERL 189
           E+AEKA   FN   + G+ L V+ A      PE +     D    +Y+ NLP D+   RL
Sbjct: 165 EEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQ-PRVYDAAFRIYVGNLPWDVDSGRL 223

Query: 190 NTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
             LFS  G + ++RV        S+G GFV      +   AI  ++GQ
Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQ 271


>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 426

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDM 174
           V Y     A  A    NG  + G+ +KV++A    + +     DT S  N+++ +L P++
Sbjct: 105 VHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQRE-----DTSSHFNIFVGDLSPEV 159

Query: 175 TLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
           T   L   FS F + +++RV        S+G GFV +  +Q A+ AI  MNG+
Sbjct: 160 TDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 212



 Score = 35.1 bits (77), Expect = 0.029
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +1

Query: 97  LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQ--GIGFVCYE 264
           L+ E+   + P   + +Y+ NL P++T   L+ LF   G   I   RV +  G GFV Y 
Sbjct: 256 LSNEDAPENNPQF-TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYN 314

Query: 265 TRQQAEDAIKHMNGQ 309
           T  +A  AI+  N Q
Sbjct: 315 THDEAALAIQMGNAQ 329


>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
           PABP, putative non-consensus splice donor TA at exon 1;
           similar to polyadenylate-binding protein
           (poly(A)-binding protein) from [Triticum aestivum]
           GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
           thaliana} SP|P42731; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 407

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 20/123 (16%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFAL--LNPENKVSHKPDTES----------- 141
           V +EK E A  A    NG+++  K L V  A    N    +  K + E            
Sbjct: 164 VNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGM 223

Query: 142 NLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHM 300
           NLY+ NL   +   +L  LFS FG IT+ +V       S+G+GFV + T ++A  A+  M
Sbjct: 224 NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKM 283

Query: 301 NGQ 309
           NG+
Sbjct: 284 NGK 286



 Score = 37.9 bits (84), Expect = 0.004
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
 Frame = +1

Query: 61  MQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN----- 225
           ++GK +++ F+  +P N++S +     N+++ NL   +  ++L  +FS FG + +     
Sbjct: 9   LKGKPMRIMFSERDPSNRMSGR----GNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVAR 64

Query: 226 --SRVSQGIGFVCYETRQQAEDAIKHMNG 306
             S VS+G GFV + +      A    NG
Sbjct: 65  DASGVSKGYGFVQFYSDLSVYTACNFHNG 93



 Score = 37.5 bits (83), Expect = 0.005
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKH 297
           +N+Y+ NL    T   L  LF  FG IT++ V       S+  GFV +E  + A  AI+ 
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178

Query: 298 MNG 306
           MNG
Sbjct: 179 MNG 181



 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKV 117
           VE+   E+A KA    NG ++  K + VS A    ++K+
Sbjct: 268 VEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKL 306


>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
           RNA Binding Protein 47 [Nicotiana plumbaginifolia]
           GI:9663769, DNA binding protein ACBF GB:AAC49850 from
           [Nicotiana tabacum]; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 435

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +1

Query: 133 TESNLYISNLPPDMTLERLNTLFSPFGNITNSR--VSQGIGFVCYETRQQAEDAIKHMNG 306
           T + +++  + PD+  E L   FS FG + + +  V +G GFV +  R+ AEDAI+ +NG
Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNG 378



 Score = 32.3 bits (70), Expect = 0.20
 Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
           VE+     AE+    ++G +M    +  ++++A  +   K + +   + ++++ +L PD+
Sbjct: 154 VEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDV 213

Query: 175 TLERLNTLFSP-FGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
           T   L+  FS  + ++ +++V        S+G GFV +    +   A+  MNG
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNG 266


>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +1

Query: 115 VSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSR--VSQGIGFVCYETRQQAEDA 288
           +S      S +++  L  D+T E L   FS FG + + +  V +G GFV +  RQ AE+A
Sbjct: 319 MSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEA 378

Query: 289 IKHMNG 306
           I ++NG
Sbjct: 379 IGNLNG 384



 Score = 33.5 bits (73), Expect = 0.088
 Identities = 25/113 (22%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
           VE+     AE+A  +F+G+ M    +  ++++A  +   K + +   + ++++ +L PD+
Sbjct: 165 VEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDV 224

Query: 175 T-LERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
           +    L T    + ++  ++V        S+G GFV +    +   A+  MNG
Sbjct: 225 SDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNG 277



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
           D    L++ +L   M    L+T FS    +++ +V        S+G GFV + +R  AE+
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175

Query: 286 AIKHMNG 306
           A++  +G
Sbjct: 176 ALQSFSG 182


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
 Frame = +1

Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYET 267
           K   K   E+NLYI  LPP +  + L  LFS FG I  ++V        S+G GFV Y  
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530

Query: 268 RQQAEDAIKHMNG 306
            Q A  A++ MNG
Sbjct: 531 VQMANTAVQAMNG 543


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
 Frame = +1

Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYET 267
           K   K   E+NLYI  LPP +  + L  LFS FG I  ++V        S+G GFV Y  
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530

Query: 268 RQQAEDAIKHMNG 306
            Q A  A++ MNG
Sbjct: 531 VQMANTAVQAMNG 543


>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           SP|P19684 33 kDa ribonucleoprotein, chloroplast
           precursor {Nicotiana sylvestris}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 308

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
 Frame = +1

Query: 19  EDAEKARAAFNGLLMQGKTLKVSFALL-------NPENKVSHKP-DTESNLYISNLPPDM 174
           E+A+ A   F+   + G+ + VSFA         +P +  S  P DT   LY+SNL    
Sbjct: 146 EEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKA 205

Query: 175 TLERLNTLFSPFG-NITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
               L  LF+    N  ++RV        S G GFV + TR++AE+AI  +NG+
Sbjct: 206 RSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGK 259


>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
 Frame = +1

Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRVS--------QGIGFVCYETRQQAEDAI 291
           ES +++  L  D+T  +L + F  +G IT  ++         +G GF+ +  R+ A+DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 292 KHMNGQ 309
           KHM+G+
Sbjct: 71  KHMHGR 76


>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
 Frame = +1

Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRVS--------QGIGFVCYETRQQAEDAI 291
           ES +++  L  D+T  +L + F  +G IT  ++         +G GF+ +  R+ A+DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 292 KHMNGQ 309
           KHM+G+
Sbjct: 71  KHMHGR 76


>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 439

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
 Frame = +1

Query: 70  KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV----- 234
           KTL  + +LL  +         E  L++  LP +++   + +LFS +G I + ++     
Sbjct: 83  KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQ 142

Query: 235 --SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGAVIV 342
             S+G  F+ YET++QA  A++ +NG+  + G+   +V
Sbjct: 143 QTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLV 180



 Score = 36.3 bits (80), Expect = 0.012
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
 Frame = +1

Query: 106 ENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFG-----NITN---SRVSQGIGFVCY 261
           EN+  ++ +    L++  +P  M+  +L TLF  F      NI     +R S+G  F+  
Sbjct: 7   ENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLC 66

Query: 262 ETRQQAEDAIKHMNGQCPIPGAGAVI-VKF 348
            +R++A+  +   + +  +PGA +++ VK+
Sbjct: 67  PSREEADKLVNACHNKKTLPGANSLLQVKY 96


>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 441

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
 Frame = +1

Query: 70  KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV----- 234
           KTL  + +LL  +         E  L++  LP +++   + +LFS +G I + ++     
Sbjct: 83  KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQ 142

Query: 235 --SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGAVIV 342
             S+G  F+ YET++QA  A++ +NG+  + G+   +V
Sbjct: 143 QTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLV 180



 Score = 37.5 bits (83), Expect = 0.005
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
           +NL+I N+P +   + L   F  FG + +++V        S+  GFV Y+++  A++AI 
Sbjct: 349 ANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAID 408

Query: 295 HMNGQ 309
            MNG+
Sbjct: 409 MMNGR 413



 Score = 36.3 bits (80), Expect = 0.012
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
 Frame = +1

Query: 106 ENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFG-----NITN---SRVSQGIGFVCY 261
           EN+  ++ +    L++  +P  M+  +L TLF  F      NI     +R S+G  F+  
Sbjct: 7   ENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLC 66

Query: 262 ETRQQAEDAIKHMNGQCPIPGAGAVI-VKF 348
            +R++A+  +   + +  +PGA +++ VK+
Sbjct: 67  PSREEADKLVNACHNKKTLPGANSLLQVKY 96


>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 438

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
           +NL+I N+P +   + L   F PFG + +++V        S+  GF+ Y+++  A++AI 
Sbjct: 339 ANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398

Query: 295 HMNGQCPIPG 324
            MNG C + G
Sbjct: 399 TMNG-CQLSG 407



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 13/123 (10%)
 Frame = +1

Query: 19  EDAEKARAAF-NGLLMQGKT--LKVSFA--LLNPENKVSHKPDTESNLYISNLPPDMTLE 183
           EDA+K   +F N   + G +  L+V +A   L   + +    + E  L++  LP +++  
Sbjct: 64  EDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSET 123

Query: 184 RLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGA-VI 339
            + +LFS +G I + ++       S+G  F+ YE+++QA  A++ +NG+  + GA   +I
Sbjct: 124 EVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLI 183

Query: 340 VKF 348
           VK+
Sbjct: 184 VKW 186



 Score = 30.7 bits (66), Expect = 0.62
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAIKHM 300
           L++  +P  MT  +L TLF  F  +          +R  +G  F+   TR+ A+  I   
Sbjct: 14  LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73

Query: 301 NGQCPIPGAGAVI-VKF 348
           + +  +PGA + + VK+
Sbjct: 74  HNKKTLPGASSPLQVKY 90


>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 429

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
           +NL+I N+P +   + L   F PFG + +++V        S+  GF+ Y+++  A++AI 
Sbjct: 330 ANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389

Query: 295 HMNGQCPIPG 324
            MNG C + G
Sbjct: 390 TMNG-CQLSG 398



 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
 Frame = +1

Query: 19  EDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTL 198
           EDA+K   +F+      KTL  + + L  +         E  L++  LP +++   + +L
Sbjct: 64  EDADKVINSFHNK----KTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSL 119

Query: 199 FSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGA-VIVKF 348
           FS +G I + ++       S+G  F+ YE+++QA  A++ +NG+  + GA   +IVK+
Sbjct: 120 FSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKW 177



 Score = 30.7 bits (66), Expect = 0.62
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAIKHM 300
           L++  +P  MT  +L TLF  F  +          +R  +G  F+   TR+ A+  I   
Sbjct: 14  LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73

Query: 301 NGQCPIPGAGAVI-VKF 348
           + +  +PGA + + VK+
Sbjct: 74  HNKKTLPGASSPLQVKY 90


>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
           protein low similarity to RNA-binding protein RGP-3
           [Nicotiana sylvestris] GI:1009363; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 156

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
 Frame = +1

Query: 88  FALLNP--ENKVSHKPDTE--SNLYISNLPPDMTLERLNTLFSPFGNITNSRV------- 234
           F+ L+P  E++   +P  E  +NL++S L    T E L T F+ FG + +++V       
Sbjct: 35  FSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSG 94

Query: 235 -SQGIGFVCYETRQQAEDAIKHMNGQ 309
            S+G GFV Y T + +   I  M+G+
Sbjct: 95  YSKGFGFVRYATLEDSAKGIAGMDGK 120


>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
           protein low similarity to glycine-rich RNA-binding
           protein [Euphorbia esula] GI:2645699; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 337

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGN-----ITNSRVSQG--IGFVCYETRQQAEDA 288
           D  +++Y+  LP D+T E +  +FS +G+     I N R  +G   GFV +  R+ A+DA
Sbjct: 4   DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDA 63

Query: 289 IKHMNGQ 309
           I+ M+G+
Sbjct: 64  IEDMDGK 70


>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 126

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
 Frame = +1

Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYET 267
           + S  P + S+L++      ++  RL  +FS FG +TN        +R S G G+V + +
Sbjct: 49  EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 108

Query: 268 RQQAEDAIKHMNGQ 309
           ++ A+ A++ MNG+
Sbjct: 109 KEDAQSAVEAMNGK 122


>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 172

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
 Frame = +1

Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYET 267
           + S  P + S+L++      ++  RL  +FS FG +TN        +R S G G+V + +
Sbjct: 68  EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 127

Query: 268 RQQAEDAIKHMNGQ 309
           ++ A+ A++ MNG+
Sbjct: 128 KEDAQSAVEAMNGK 141


>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
           protein similar to SP|P52298 20 kDa nuclear cap binding
           protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
           protein 1) (NIP1) {Homo sapiens}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 124

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
 Frame = +1

Query: 127 PDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-----SQGIGFVCYETRQQAEDAI 291
           P+    LY+ NLP ++T E +  +F  +G I   R+     ++G  FV YE    A++A+
Sbjct: 15  PEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAV 74

Query: 292 KHMNG 306
            H++G
Sbjct: 75  DHLSG 79


>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 783

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKV---SHKPDTESNLYISNLPPD 171
           VE++  E A        G ++ G  L + F      +KV   S+K    + L++ N+  +
Sbjct: 620 VEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFE 679

Query: 172 MTLERLNTLFSPFGNITNSRVSQ-------GIGFVCYETRQQAEDAIK 294
            T   L  LFSPFG I + R+ +       G  FV + T+Q+A +A K
Sbjct: 680 ATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKK 727



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNIT--------NSRVSQGIGFVCYETRQQAEDAIKHM 300
           L++ NLP   T E L   FS FG I+         ++ S+GI ++ Y   + A  A++ +
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 322

Query: 301 N 303
           +
Sbjct: 323 D 323


>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
           protein low similarity to splicing factor SC35
           [Arabidopsis thaliana] GI:9843653; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 261

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
 Frame = +1

Query: 133 TESNLYISNLPPDMTLERLNTLFSPFGNIT--------NSRVSQGIGFVCYETRQQAEDA 288
           ++S LY+SNL   +T   ++TLFS FG +         ++R S+G+ FV Y +R+ A  A
Sbjct: 55  SKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKA 114

Query: 289 IKHMNGQ 309
            + M+ +
Sbjct: 115 ARSMDAK 121


>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana] ; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 87

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
           + +Y+ NL P  T + L   FS +GN+ ++ V        S+G GFV Y +  +AE A+ 
Sbjct: 3   TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62

Query: 295 HMNGQ 309
            M+G+
Sbjct: 63  GMDGK 67


>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
           (RNA-binding protein cp31) {Arabidopsis thaliana};
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
 Frame = +1

Query: 19  EDAEKARAAFNGLLMQGKTLKVSFAL---LNPENKVSHKPDTESNLYISNLPPDMTLERL 189
           ++AE A   FN   + G+ L V+ A      PE +     +    +Y+ NLP D+   RL
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPE-RAPRVYEPAFRVYVGNLPWDVDNGRL 260

Query: 190 NTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
             LFS  G +  +RV        S+G GFV      +  +AI  ++GQ
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQ 308


>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 533

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
 Frame = +1

Query: 1   VEYEKHEDAEKA-RAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMT 177
           V+Y   +DA++A RA  N + + G T  V     + E +       E  L++ +L    T
Sbjct: 166 VKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERE--RIGTLEFKLFVGSLNKQAT 223

Query: 178 LERLNTLFSPFGNITNS-------RVSQGIGFVCYETRQQAEDAIKHMNGQCPIPGAG-A 333
            + +  +F  FG++ +        R S+G GFV Y +++ A  AI  +NG   + G    
Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 283

Query: 334 VIVKF 348
           +IV+F
Sbjct: 284 LIVRF 288


>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 747

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
 Frame = +1

Query: 1   VEYEKHEDAEKA-RAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMT 177
           V+Y   +DA++A RA  N + + G T  V     + E +       E  L++ +L    T
Sbjct: 166 VKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERE--RIGTLEFKLFVGSLNKQAT 223

Query: 178 LERLNTLFSPFGNITNS-------RVSQGIGFVCYETRQQAEDAIKHMNGQCPIPGAG-A 333
            + +  +F  FG++ +        R S+G GFV Y +++ A  AI  +NG   + G    
Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 283

Query: 334 VIVKF 348
           +IV+F
Sbjct: 284 LIVRF 288


>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 430

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDM 174
           V Y     A  A    NG  + G+ +KV++A    + +     DT S  N+++ +L P++
Sbjct: 105 VHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQRE-----DTSSHFNIFVGDLSPEV 159

Query: 175 TLERLNTLFSPFGNITN----SRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
           T   L   FS F + ++    +RV        S+G GFV +  +Q A+ AI  MNG+
Sbjct: 160 TDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 216



 Score = 35.1 bits (77), Expect = 0.029
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +1

Query: 97  LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQ--GIGFVCYE 264
           L+ E+   + P   + +Y+ NL P++T   L+ LF   G   I   RV +  G GFV Y 
Sbjct: 260 LSNEDAPENNPQF-TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYN 318

Query: 265 TRQQAEDAIKHMNGQ 309
           T  +A  AI+  N Q
Sbjct: 319 THDEAALAIQMGNAQ 333


>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
          Length = 425

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGK--TLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
           +E+  H  AE+    +NG  M G   T ++++A      KV   PD   ++++ +L PD+
Sbjct: 70  IEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPD--HSIFVGDLAPDV 127

Query: 175 TLERLNTLFSP-FGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
           T   L   F   + ++  ++V        S+G GFV +    +   A+  MNG
Sbjct: 128 TDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNG 180


>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
           protein low similarity to enhancer binding protein-1;
           EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
           kDa ribonucleoprotein, chloroplast precursor (28RNP)
           {Nicotiana sylvestris}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 304

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHK----PDTESNLYISNLPP 168
           +E    E+A  A  +      +G+ LKV +A    +   + +    P    NL+++NL  
Sbjct: 139 IEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAF 198

Query: 169 DMTLERLNTLF-SPFGNIT--------NSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
           +   + L   F +  GN+         N R S G GFV ++T++QAE A+    G+
Sbjct: 199 EARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGK 254


>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 310

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
           VE+E H+ A+K    FNG  M    +  ++++A  +   K       + ++++ +L PD+
Sbjct: 149 VEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDV 208

Query: 175 TLERLNTLFS-PFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
           +   L+  FS  + ++  ++V        S+G GFV +    +   A+  MNG
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 223 NSRVSQGIGFVCYETRQQAEDAIKHMNG 306
           N+ +S+G GFV +E+   A+  ++  NG
Sbjct: 139 NNGLSEGYGFVEFESHDVADKVLREFNG 166


>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 432

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
           VE+E H+ A+K    FNG  M    +  ++++A  +   K       + ++++ +L PD+
Sbjct: 149 VEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDV 208

Query: 175 TLERLNTLFS-PFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
           +   L+  FS  + ++  ++V        S+G GFV +    +   A+  MNG
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
 Frame = +1

Query: 49  NGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNS 228
           NG   QG  +  +  L  PE  + +     + +++  L   +T E L   F+ FG I + 
Sbjct: 280 NGYQQQGGYMP-NGTLTRPEGDIMN-----TTIFVGGLDSSVTDEDLKQPFNEFGEIVSV 333

Query: 229 R--VSQGIGFVCYETRQQAEDAIKHMNG 306
           +  V +G GFV +  R  AE+A++ +NG
Sbjct: 334 KIPVGKGCGFVQFVNRPNAEEALEKLNG 361



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 223 NSRVSQGIGFVCYETRQQAEDAIKHMNG 306
           N+ +S+G GFV +E+   A+  ++  NG
Sbjct: 139 NNGLSEGYGFVEFESHDVADKVLREFNG 166


>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
           contains similarity to polyadenylate-binding protein 5
          Length = 387

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
           +E+  H  AE+    +NG  M    +T ++++A      K       +  +++ +L P++
Sbjct: 106 IEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEV 165

Query: 175 TLERLNTLF-SPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309
           T   L+  F + +G++  ++V        S+G GFV +    +   A+  MNGQ
Sbjct: 166 TDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQ 219



 Score = 36.3 bits (80), Expect = 0.012
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQG--IGFVCYETRQQAEDAIKHMNG 306
           + +++  L  ++T + L ++F  FG + + ++  G   GFV Y  +  AE A+  +NG
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNG 317


>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
           3G, putative / eIF3g, putative similar to eukaryotic
           translation initiation factor 3g [Arabidopsis thaliana]
           GI:12407751; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 276

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
 Frame = +1

Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAI 291
           E+++ ++NL  D     L  LF PFG +T   V        S+G GFV + +R+ A+ AI
Sbjct: 173 ENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232

Query: 292 KHMNG 306
             +NG
Sbjct: 233 NKLNG 237


>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 434

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSR--VSQGIGFVCYETRQQAEDAIKHMNG 306
           + +++  L   +T E L   FS FG I + +  V +G GFV +  R  AE+A++ +NG
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNG 363



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
           VE+E H+ A+K    FNG  M    +  ++++A  +   K       + ++++ +L PD+
Sbjct: 151 VEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDV 210

Query: 175 TLERLNTLFS-PFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
           +   L+  FS  + ++  ++V        S+G GFV +    +   A+  MNG
Sbjct: 211 SDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 263


>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
           3G / eIF3g nearly identical to eukaryotic translation
           initiation factor 3g [Arabidopsis thaliana] GI:12407751
          Length = 294

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
 Frame = +1

Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAI 291
           E+++ ++NL  D     L  LF PFG +T         + VS+G GFV + +R+ A+ AI
Sbjct: 212 ENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271

Query: 292 KHMNG 306
             +NG
Sbjct: 272 NKLNG 276


>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 250

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 142 NLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIK 294
           ++Y+ N   D     L  LFS FG +    +  G  FV +E  + AEDAI+
Sbjct: 3   HVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIR 53


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
           + LYI  L P      L   FS F  +T +RV        S+G GFV + +   A  AI 
Sbjct: 31  TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90

Query: 295 HMNGQ 309
            MNGQ
Sbjct: 91  AMNGQ 95


>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
           (RSP31) identical to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 264

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIK 294
           L++ N  P  T E  +   F P+G +TN R+ +   FV +ET++ A  A++
Sbjct: 95  LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALE 145


>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
           Cold-inducible RNA-binding protein (Glycine-rich
           RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
           {Rattus norvegicus} SP|Q61413,{Xenopus laevis};
           SP|O93235; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 102

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
           + L++S L    T + L  LFSPFG I  +R+         +G GF+ +++   A  A+K
Sbjct: 7   AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66

Query: 295 HMNGQ 309
            ++G+
Sbjct: 67  SLDGK 71


>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           chloroplast RNA-binding protein (cp33) GB:BAA06523
           (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
           (1995)); contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 19/115 (16%)
 Frame = +1

Query: 19  EDAEKARAAFNGLLMQGKTLKVSFALL--NPENKVSHKPDTESN---------LYISNLP 165
           E+A++A   FN   + G+T+KV+F  +    EN+V      ++N         +Y  NL 
Sbjct: 168 EEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLG 227

Query: 166 PDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306
            ++T + L   F     +  ++V        S+G GF+ +E+ +  + A+  MNG
Sbjct: 228 WNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNG 282



 Score = 35.1 bits (77), Expect = 0.029
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
 Frame = +1

Query: 106 ENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCY 261
           E + +     E  LY+ NLP  +T   L+ +F   G + + ++        S+G GFV  
Sbjct: 105 EKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTM 164

Query: 262 ETRQQAEDAIKHMN 303
            + ++A++A++  N
Sbjct: 165 GSIEEAKEAMQMFN 178


>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp29, putative similar to
           SP|Q43349 29 kDa ribonucleoprotein, chloroplast
           precursor (RNA-binding protein cp29) {Arabidopsis
           thaliana}
          Length = 289

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
           + +Y+ NL   +    L +LFS  G +  +RV        S+G GFV Y++ Q+ ++AIK
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263

Query: 295 HMNG 306
            ++G
Sbjct: 264 SLDG 267



 Score = 31.5 bits (68), Expect = 0.36
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
 Frame = +1

Query: 88  FALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQG 243
           FA + P  + S   D +  L++ NLP ++   +L  LF   GN+    V        S+G
Sbjct: 76  FADVAPPKEQSFSADLK--LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRG 133

Query: 244 IGFVCYETRQQAEDAIKHMNG 306
            GFV   +  + E A +  NG
Sbjct: 134 FGFVTMSSVSEVEAAAQQFNG 154


>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
           S +++  L P++T   L   FS FG+I + ++        S+G GF+ +  R+  +++I+
Sbjct: 7   SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66

Query: 295 HMNGQ 309
            M+G+
Sbjct: 67  EMHGR 71


>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           [Triticum aestivum] GI:1737492; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 101

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
 Frame = +1

Query: 100 NPENKVSHK-PDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFV 255
           N +N  S   P   ++LYI+NL   ++ E L  +FS FG +  S +       S+G  F+
Sbjct: 3   NDDNHGSSSCPRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFI 62

Query: 256 CYETRQQAEDAIKHMNGQ 309
            +E+   A  A+ HM+G+
Sbjct: 63  EFESADSAGRAMLHMDGR 80


>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
           DNA binding protein ACBF - Nicotiana tabacum,
           PID:g1899188
          Length = 415

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 100 NPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQG--IGFVCYETRQ 273
           N +        T + +++  +   +T + L ++F  FG + + ++  G   GFV Y  R 
Sbjct: 265 NTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRA 324

Query: 274 QAEDAIKHMNG 306
            AE A+  +NG
Sbjct: 325 CAEQALSVLNG 335



 Score = 36.3 bits (80), Expect = 0.012
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNP-ENKVSHKPDTESNLYISNLPPD 171
           +E+  H  AE+    +NG  M    +  ++++A L   E + +  P  E  +++ +L PD
Sbjct: 126 IEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGP--EHTVFVGDLAPD 183

Query: 172 MTLERLNTLFSPF------GNITNSRV---SQGIGFVCYETRQQAEDAIKHMNGQ 309
           +T   L   F           + N R    S+G GFV +    +   A+  MNGQ
Sbjct: 184 VTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQ 238


>At1g27050.1 68414.m03298 homeobox-leucine zipper family protein
           contains Pfam profile:PF00046 Homeobox domain and Pfam
           profile:PF00076 RNA recognition motif
          Length = 444

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 124 KPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ-GIGFVCYETRQQAEDAI 291
           KP     L +  LP + ++  L + F  +G+I+  R+ + GIG V Y T + AE AI
Sbjct: 281 KPPPPPALVVMGLPANCSVLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAI 337


>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
           protein similar to SP|Q14011 Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) {Homo
           sapiens}; contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 157

 Score = 36.3 bits (80), Expect = 0.012
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 154 SNLPPDMTLERLNTLFSPFGNITNSRVSQ---GIGFVCYETRQQAEDAIKHMNGQ 309
           S L    T + L  LF+PF  +   + +Q   G GF+ +E+   A+ A+K +NG+
Sbjct: 76  SGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130



 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 93
           + +E  +DA+KA  A NG ++ G+ + V  A
Sbjct: 112 ITFESEDDAQKALKALNGKIVNGRLIFVETA 142


>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 451

 Score = 36.3 bits (80), Expect = 0.012
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +1

Query: 43  AFNGLLMQGKTLKVSFALLNPENKVSHKPDTES---NLYISNLPPDMTLERLNTLFSPFG 213
           +F G ++ G  L +SF+   P   V    D ++    L++ N+  + T++ +  LF+PFG
Sbjct: 316 SFKGTVVDGHALILSFSKNKPSGTVGKDLDKDTILTKLHVKNIAFEATMKEVRQLFTPFG 375

Query: 214 NI 219
            I
Sbjct: 376 QI 377


>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
           (RSP40) identical to SP|P92965 Arginine/serine-rich
           splicing factor RSP40 {Arabidopsis thaliana}
          Length = 309

 Score = 36.3 bits (80), Expect = 0.012
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMN 303
           L++ N   D T  R L   F P+G I N R+ +   F+ YE ++ A  A+   N
Sbjct: 58  LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN 111



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVS-HKPD 132
           ++YE  EDA +A  A N   +  K + V +A+ + + + + H P+
Sbjct: 95  IQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 139


>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
           (RSP40) identical to SP|P92965 Arginine/serine-rich
           splicing factor RSP40 {Arabidopsis thaliana}
          Length = 350

 Score = 36.3 bits (80), Expect = 0.012
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMN 303
           L++ N   D T  R L   F P+G I N R+ +   F+ YE ++ A  A+   N
Sbjct: 99  LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN 152



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVS-HKPD 132
           ++YE  EDA +A  A N   +  K + V +A+ + + + + H P+
Sbjct: 136 IQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 180


>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
           similar to gb|U90212 DNA binding protein ACBF from
           Nicotiana tabacum and contains 3 PF|00076 RNA
           recognition motif domains. ESTs gb|T44278, gb|R65195,
           gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
           gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
          Length = 405

 Score = 36.3 bits (80), Expect = 0.012
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQG--IGFVCYETRQQAEDAIKHMNG 306
           + +++  L   +T + L  +FS +G I + ++  G   GFV +  +  AE+A++ +NG
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNG 318


>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGF 252
           + +YISNLPPD+T + L  LF   G +   R+ Q  G+
Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQV--GRIKQKRGY 315


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGF 252
           + +YISNLPPD+T + L  LF   G +   R+ Q  G+
Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQV--GRIKQKRGY 315


>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 159

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
           D E   ++  L        L T F+ +G++ +S++        S+G GFV ++  +  +D
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 286 AIKHMNGQ 309
           AI+ MNGQ
Sbjct: 65  AIEGMNGQ 72


>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 176

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
           D E   ++  L        L T F+ +G++ +S++        S+G GFV ++  +  +D
Sbjct: 5   DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64

Query: 286 AIKHMNGQ 309
           AI+ MNGQ
Sbjct: 65  AIEGMNGQ 72


>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
           protein 
          Length = 987

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +1

Query: 61  MQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-- 234
           MQ +      +L +PE       D +  L +SNL P +T E+L  LFS  G + +  +  
Sbjct: 327 MQAQAQSNKGSLGSPEK--GENGDLKKFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSITD 384

Query: 235 SQGIGFVCYETRQQAEDAI 291
           S+ I ++ Y   ++A  A+
Sbjct: 385 SKHIAYIEYSNSEEATAAL 403


>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
           protein low similarity to SP|Q10572 Sex determination
           protein fox-1 (Feminizing locus on X protein 1)
           {Caenorhabditis elegans}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 101

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +1

Query: 127 PDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-----SQGIGFVCYETRQQAEDAI 291
           P+    LYI NLP  +T E    LF  +  I   R+     ++G  FV YE    A+ A+
Sbjct: 16  PEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDIYDAKKAV 75

Query: 292 KHM 300
            H+
Sbjct: 76  DHL 78


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKP 129
           VE++   DAEKA+   +G  + GK +K +F  L P  KVS  P
Sbjct: 144 VEFKARADAEKAQLYMDGAQIDGKVVKATFT-LPPRQKVSSPP 185


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKP 129
           VE++   DAEKA+   +G  + GK +K +F  L P  KVS  P
Sbjct: 144 VEFKARADAEKAQLYMDGAQIDGKVVKATFT-LPPRQKVSSPP 185


>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 92

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
           + E   ++  L      E L   FS FG++ +S++        S+G GFV ++  +   D
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 286 AIKHMNGQ 309
           AI+ MNG+
Sbjct: 63  AIEEMNGK 70


>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 126

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
           + E   ++  L      E L   FS FG++ +S++        S+G GFV ++  +   D
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 286 AIKHMNGQ 309
           AI+ MNG+
Sbjct: 63  AIEEMNGK 70


>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 169

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
           + E   ++  L      E L   FS FG++ +S++        S+G GFV ++  +   D
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 286 AIKHMNGQ 309
           AI+ MNG+
Sbjct: 63  AIEEMNGK 70


>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 100

 Score = 34.7 bits (76), Expect = 0.038
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
 Frame = +1

Query: 115 VSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETR 270
           +SH  D E+ +Y++ LP     E L + F  FG I  ++V        S+G GFV +   
Sbjct: 1   MSHPNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREV 60

Query: 271 QQAEDAIKHMN 303
           + A  A ++ N
Sbjct: 61  ESATRACENPN 71


>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 105

 Score = 34.7 bits (76), Expect = 0.038
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
           + E   ++  L      E L   FS FG++ +S++        S+G GFV ++  +   D
Sbjct: 3   EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62

Query: 286 AIKHMNG 306
           AI+ MNG
Sbjct: 63  AIEEMNG 69


>At2g47310.1 68415.m05906 flowering time control protein-related /
           FCA gamma-related 
          Length = 512

 Score = 34.7 bits (76), Expect = 0.038
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNG-LLMQGKTLKVSFALLNPEN-KVSHKP---DTESNLYISNLP 165
           ++Y+K E+   A AA        G+ L V       E  ++   P        LY+  L 
Sbjct: 156 IKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLN 215

Query: 166 PDMTLERLNTLFSPFGNITN-------SRVSQGIGFVCYETRQQAEDAIKHMNGQCPIPG 324
              T   +N +FS +G I +        ++ +G  FV +  ++ A  AIK +NG   I G
Sbjct: 216 KQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRG 275

Query: 325 AG-AVIVKF 348
           +   +IV+F
Sbjct: 276 SDQPLIVRF 284


>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 357

 Score = 33.9 bits (74), Expect = 0.067
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMN 303
           L++ N     T  R L   F P+G I N R+ +   F+ YE ++ A  A+   N
Sbjct: 98  LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATN 151



 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENK 114
           ++YE  EDA +A  A N   +  K + V +A+ + +++
Sbjct: 135 IQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSR 172


>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 356

 Score = 33.9 bits (74), Expect = 0.067
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMN 303
           L++ N     T  R L   F P+G I N R+ +   F+ YE ++ A  A+   N
Sbjct: 98  LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATN 151



 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENK 114
           ++YE  EDA +A  A N   +  K + V +A+ + +++
Sbjct: 135 IQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSR 172


>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
           protein heterogeneous nuclear ribonucleoprotein R, Homo
           sapiens, PIR:T02673; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 471

 Score = 33.9 bits (74), Expect = 0.067
 Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
 Frame = +1

Query: 1   VEYEKHEDAE--KARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174
           +EY  H  AE  K + +     +      VS+A                 LYI NLP D+
Sbjct: 220 IEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDI 279

Query: 175 TLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAIKH 297
           T ERL  LF   G I           +     GFV Y  R     A+K+
Sbjct: 280 TQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKN 328


>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GI:7673355 from [Nicotiana tabacum]; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 620

 Score = 33.5 bits (73), Expect = 0.088
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
 Frame = +1

Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ-------GIGFVCYETRQQAEDAIK 294
           E  L+++NLP +  +  +   F   G +   ++         G GFV + +  +AE+A++
Sbjct: 126 EKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQ 185

Query: 295 HMNGQC 312
             NG+C
Sbjct: 186 KKNGEC 191



 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = +1

Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ-------GIGFVCYETRQQAEDAIK 294
           E  L+++NL P   +  +   F+  G + + R+         G GFV + +  + + A++
Sbjct: 243 EEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALE 302

Query: 295 HMNGQ 309
           + NG+
Sbjct: 303 NKNGE 307



 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
 Frame = +1

Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIK 294
           +  L+++NL P   +  +   F     +   R+         G GFV + +  +A+ A++
Sbjct: 488 KKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQ 547

Query: 295 HMNGQ 309
            MNG+
Sbjct: 548 KMNGE 552


>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
           protein similar to SP|P48809 Heterogeneous nuclear
           ribonucleoprotein 27C (hnRNP 48) {Drosophila
           melanogaster}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM);
           non-consensus TA donor splice site at exon 6
          Length = 379

 Score = 33.5 bits (73), Expect = 0.088
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
 Frame = +1

Query: 7   YEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLER 186
           Y     AE A+ A  G    G  + +   +  P+ ++       + ++++ +P  ++   
Sbjct: 48  YVTFASAEDAKNALKGEHFLGNRI-LEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESD 106

Query: 187 LNTLFSPFGNIT--------NSRVSQGIGFVCYETRQQAEDAIK 294
             + F  +G IT        NS+  +GIGF+ + +    ED ++
Sbjct: 107 FRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME 150


>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
           protein low similarity to SP|Q03251 Glycine-rich
           RNA-binding protein 8 (CCR1 protein) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 181

 Score = 33.5 bits (73), Expect = 0.088
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
 Frame = +1

Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAI 291
           ++ LY+S L    T + L   F  FGN+ +  +         +G  F+ YET ++A  AI
Sbjct: 76  KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI 135

Query: 292 KHMNGQ 309
           + M+G+
Sbjct: 136 QGMHGK 141


>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 180

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAIKH 297
           LYI NLP D+T ERL  LF   G I           +     GFV Y  R     A+K+
Sbjct: 36  LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKN 94


>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
           protein similar to nucleolin protein; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 495

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
 Frame = +1

Query: 22  DAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDMTLERLNT 195
           D  + +   +   ++G    V++A  +P++   H         LY+ N+P + + E+L  
Sbjct: 253 DYSRQKMIDSNFKLEGNAPTVTWA--DPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKE 310

Query: 196 LFSPFGNITNSRVSQG------IGFVCYETRQQAEDAIK 294
           LF   G +T      G       GFV Y  R  A  A+K
Sbjct: 311 LFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVK 349


>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1056

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--SQGIGFVCYETRQQAEDAIKHMNG 306
           +NL++ +L P+ T   L  LF  +G+I    V  S+G  F+ Y   ++A  A + + G
Sbjct: 18  NNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQG 75


>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 422

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
 Frame = +1

Query: 118 SHKPDTE-SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETR 270
           S KP  + S+++++NLP D T+E+L   F  FG I    +           IGFV +E  
Sbjct: 267 SIKPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENG 326

Query: 271 QQAEDAIK 294
           +  ++  +
Sbjct: 327 EAVKNVFQ 334


>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 334

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
           + LY+ NL   +    L  LF+  G +  +RV        S+G GFV   + Q+ + AI 
Sbjct: 249 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 308

Query: 295 HMNG 306
            +NG
Sbjct: 309 SLNG 312



 Score = 31.1 bits (67), Expect = 0.47
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
 Frame = +1

Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVC 258
           P  + S  PD +  L++ NL  ++   +L  LF   GN+    V        S+G GFV 
Sbjct: 89  PVERNSFSPDLK--LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 146

Query: 259 YETRQQAEDAIKHMNG 306
             T  + E A +  NG
Sbjct: 147 MSTAAEVEAAAQQFNG 162


>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 342

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
           + LY+ NL   +    L  LF+  G +  +RV        S+G GFV   + Q+ + AI 
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316

Query: 295 HMNG 306
            +NG
Sbjct: 317 SLNG 320



 Score = 31.1 bits (67), Expect = 0.47
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
 Frame = +1

Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVC 258
           P  + S  PD +  L++ NL  ++   +L  LF   GN+    V        S+G GFV 
Sbjct: 89  PVERNSFSPDLK--LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 146

Query: 259 YETRQQAEDAIKHMNG 306
             T  + E A +  NG
Sbjct: 147 MSTAAEVEAAAQQFNG 162


>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
           S L++  L        L   F+ FG +T + V        S+G GFV +     A +AIK
Sbjct: 35  SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94

Query: 295 HMNGQ 309
            M+G+
Sbjct: 95  EMDGK 99


>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294
           S L++  L        L   F+ FG +T + V        S+G GFV +     A +AIK
Sbjct: 35  SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94

Query: 295 HMNGQ 309
            M+G+
Sbjct: 95  EMDGK 99


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNI-------TNSRVSQGIGFVCYETRQQAEDAIKHMN 303
           LY+ NL  +M+ + L  +F  FG++         + + +G GFV +   + A +A+ ++N
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLN 345

Query: 304 GQCPIPG 324
           GQ  I G
Sbjct: 346 GQLEIAG 352


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
           +Y+ NLP D+    +  LFS +G +    +       G  FV +E  + A+DAI   +G
Sbjct: 9   IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDG 67


>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 178

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
           +Y+ NLP D+    +  LFS +G +    +       G  FV +E  + A+DAI   +G
Sbjct: 9   IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDG 67


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
           +Y+ NLP D+    +  LFS +G +    +       G  FV ++  + AEDAI   +G
Sbjct: 9   VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67


>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 285

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
           +Y+ NLP D+    +  LFS +G +    +       G  FV ++  + AEDAI   +G
Sbjct: 9   VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
           +Y+ NLP D+    +  LFS +G +    +       G  FV ++  + AEDAI   +G
Sbjct: 9   VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67


>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
           similarity to RNA-binding protein from [Nicotiana
           tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
           [Solanum tuberosum] GI:15822705; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 146

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
 Frame = +1

Query: 67  GKTLKVSFALLNPENKV--SHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-- 234
           G+ LK S  L+N       + +    S L+I  L    T + L+  FS  G +  +++  
Sbjct: 9   GRHLK-SVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVM 67

Query: 235 ------SQGIGFVCYETRQQAEDAIKHMNGQ 309
                 S+G GFV + +  +A+ A+   NGQ
Sbjct: 68  DRVSDRSKGFGFVTFASADEAQKALMEFNGQ 98



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 93
           V +   ++A+KA   FNG  + G+T+ V +A
Sbjct: 80  VTFASADEAQKALMEFNGQQLNGRTIFVDYA 110


>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
           Glycine-rich RNA-binding protein from {Sinapis alba}
           SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
           thaliana} SP|Q03251; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 117

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
           + E   ++  L  D   + L  +FS FGN+ +S++        S+  GFV +E  +   D
Sbjct: 4   NVEYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTD 63

Query: 286 AIKHMN 303
           AI  M+
Sbjct: 64  AIMIMD 69


>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
           putative / heterogeneous nuclear ribonucleoprotein,
           putative similar to Polypyrimidine tract-binding protein
           1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
           (hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
           sapiens} SP|P26599; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 429

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVSQGI----GFVCYETRQQAEDAIKH 297
           L++ NLP + T E L  L  PFG + N++ + G      F+ +E   QA   I +
Sbjct: 20  LHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISY 74


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +1

Query: 142 NLYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
           ++Y+ NLP D+    +  +F  +G I +  +          FV +E  + AEDAIK  +G
Sbjct: 8   SIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDG 67


>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 459

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-----SQG--IGFVCYETRQQAEDA 288
           D   ++Y+ NLP D T  +L  +F  FG I +  +      QG   GFV +ET    + A
Sbjct: 290 DDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFETSSGKQSA 349

Query: 289 IK 294
           ++
Sbjct: 350 LE 351


>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 352

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHM 300
           +Y+  +P D+T   L  +FS +G I +  +        S+G  F+ YE ++    A+ ++
Sbjct: 38  VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97

Query: 301 NG 306
           NG
Sbjct: 98  NG 99


>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
           sylvestris]
          Length = 293

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHM 300
           LY+ N+P    + +L  +F PFG + +  V        S+G G+V   +   A+ AI  +
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169

Query: 301 NG 306
           +G
Sbjct: 170 DG 171



 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 94  LLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 234
           +LN   K     +++  +Y+ NLP     + L   FS FG I ++RV
Sbjct: 197 VLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRV 243


>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 460

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNI------TNSRVSQG--IGFVCYETRQQAED 285
           D   ++Y+ NLP D T  +L  +F  FG I        S   QG   GFV +ET    + 
Sbjct: 290 DDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQS 349

Query: 286 AIK 294
           A++
Sbjct: 350 ALE 352


>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 130

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQG 243
           + S  P + S+L++      ++  RL  +FS FG +TN     G
Sbjct: 49  EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNEHYFSG 92


>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
            protein / RNA recognition motif (RRM)-containing protein
            contains Pfam profiles PF00076: RNA recognition motif.
            (a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
            transport factor 2 (NTF2) domain
          Length = 1294

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = +1

Query: 103  PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV------SQGIGFVCYE 264
            PE   +  P   + + + NLP + T+  +   F  FG I    V      S   GFV ++
Sbjct: 1064 PEANATIPPANNAAICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFK 1123

Query: 265  TRQQAEDAIK 294
                A+ AIK
Sbjct: 1124 EENAAQRAIK 1133


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNI 219
           D E  L+I NLP D+T E +   F+ FG +
Sbjct: 558 DFERTLFIRNLPFDVTKEEVKQRFTVFGEV 587


>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 169

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
 Frame = +1

Query: 133 TESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDA 288
           T + +Y+  LP     E L   F  FG I +  V        SQG GFV ++  + A  A
Sbjct: 11  TFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRA 70

Query: 289 IKHMN 303
            K  N
Sbjct: 71  CKDPN 75


>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 284

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
           + LY+  L        L  LFS +G + +  + +   FV +   + A+DA  +++G+
Sbjct: 11  TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGR 67


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285
           D E   +I  L    +   L   F  +G++  ++V        S+G GF+ ++ ++  ++
Sbjct: 4   DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63

Query: 286 AIKHMNG 306
           AI  MNG
Sbjct: 64  AIAAMNG 70


>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 505

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 229 RVSQGIGFVCYETRQQAEDAIKHMNGQCPIPGAG-AVIVKF 348
           R S+G GFV Y +++ A  AI  +NG   + G    +IV+F
Sbjct: 6   RQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRF 46


>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
           putative 
          Length = 333

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +1

Query: 94  LLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIG 249
           L +P        D    L++  L    T + L  + S +G I N R+        S+G G
Sbjct: 49  LYDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYG 108

Query: 250 FVCYETRQQ 276
           FV YET ++
Sbjct: 109 FVEYETEKE 117


>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 290

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309
           + LY+  L        L  LFS +G + +  + +   FV +   + A+DA  +++G+
Sbjct: 11  TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGR 67


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 153 QQFTTRHDPRKTQHSFQSFR*HHE*PR-VTRYRLCLLRDP 269
           Q +TT H  R T H  Q +   H  PR  T   L LLR P
Sbjct: 177 QSYTTLHHHRFTTHLLQLYTTPHHHPRSTTNTNLLLLRTP 216


>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 3427

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 10  EKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMT 177
           E  +D E    A    LM+ +  K  +  +N    +SH+PD E NLY      +MT
Sbjct: 482 EAEDDPEVDSVAGGSKLMEERLTKDEWKAIN--KLLSHQPDEEMNLYSGKDMQNMT 535


>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 4144

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 10  EKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMT 177
           E  +D E    A    LM+ +  K  +  +N    +SH+PD E NLY      +MT
Sbjct: 482 EAEDDPEVDSVAGGSKLMEERLTKDEWKAIN--KLLSHQPDEEMNLYSGKDMQNMT 535


>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein [Nicotiana
           plumbaginifolia] GI:6996560; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 419

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = +1

Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQ--GIGFVCYETR 270
           PEN   +     + +Y+ NL P+++   L+  F   G   I   RV +  G GFV Y T 
Sbjct: 253 PENNAQY-----TTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH 307

Query: 271 QQAEDAIKHMNGQCPIPG 324
            +A  AI+  N    + G
Sbjct: 308 VEAALAIQMGNTHSYLSG 325


>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 177

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
 Frame = +1

Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAI 291
           ++ LY+  L  ++    L+  F PFG+I +        ++  +  GFV +  R+ A  A+
Sbjct: 12  KNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71

Query: 292 KHMNG 306
            +M+G
Sbjct: 72  DNMDG 76


>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
           nearly identical to SF2/ASF-like splicing modulator
           Srp30 [Arabidopsis thaliana] GI:4775270
          Length = 268

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306
           +Y+ NLP D+    +  LF  +G I +  +       G  FV +E  + A+DAI   +G
Sbjct: 9   IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDG 67


>At4g10610.1 68417.m01735 RNA-binding protein, putative
          Length = 336

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 97  LNPENKVSHKPDT-ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 234
           +NP   ++ + +     +Y+S++   +T E+L  LF  FG + + R+
Sbjct: 135 MNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRI 181


>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
           protein similar to chloroplast RNA-binding protein cp33
           [Arabidopsis thaliana] GI:681912; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 253

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
 Frame = +1

Query: 70  KTLKVSFALLNPENK-VSHKPDTES--NLYISNLPPDMTLERLNTLFSPFGNITNSRV-- 234
           +T  + +A+   E K  +  P +E+   +YI N+P  +T E+L  L    G +   +V  
Sbjct: 50  RTRFIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMY 109

Query: 235 ------SQGIGFVCYETRQQAEDAIKHMNG 306
                 S+  GF   ++ + A   ++ +NG
Sbjct: 110 DKYSGRSRRFGFATMKSVEDANAVVEKLNG 139


>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
           putative BcDNA.LD24793, Drosophila melanogaster,
           EMBL:AF172637
          Length = 292

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNI-------TNSRVSQGIGFVCYETRQQAEDA 288
           +T + LYISNL   ++ E +  LFS  G++         S  S+G   V +  R  A  A
Sbjct: 105 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAA 164

Query: 289 IKHMN 303
           +K  N
Sbjct: 165 VKRYN 169


>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 82  VSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219
           ++ A ++   + S+   T+  +Y+SN+  ++  ++L   FS FG I
Sbjct: 226 IAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEI 271


>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 82  VSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219
           ++ A ++   + S+   T+  +Y+SN+  ++  ++L   FS FG I
Sbjct: 226 IAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEI 271


>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
           identical to UBP1 interacting protein 2a [Arabidopsis
           thaliana] GI:19682816; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 478

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 82  VSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219
           ++ A ++   + S+   T+  +Y+SN+  ++  ++L   FS FG I
Sbjct: 226 IAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEI 271


>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
           RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
           from [Homo sapiens], RNA-binding protein Y14 [Xenopus
           laevis] GI:11034807; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 202

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 1   VEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 93
           +EYEK E+A+ A +A NG  +  + + V +A
Sbjct: 141 IEYEKKEEAQSAISAMNGAELLTQNVSVDWA 171


>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
           putative
          Length = 242

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDA 288
           +T + LYISNL   +  E +  LF+  G +    V       S+G   V Y  R  A  A
Sbjct: 83  ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAA 142

Query: 289 IKHMN 303
           +K  N
Sbjct: 143 VKKYN 147


>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
           putative
          Length = 178

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDA 288
           +T + LYISNL   +  E +  LF+  G +    V       S+G   V Y  R  A  A
Sbjct: 19  ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAA 78

Query: 289 IKHMN 303
           +K  N
Sbjct: 79  VKKYN 83


>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
           putative
          Length = 244

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDA 288
           +T + LYISNL   +  E +  LF+  G +    V       S+G   V Y  R  A  A
Sbjct: 85  ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAA 144

Query: 289 IKHMN 303
           +K  N
Sbjct: 145 VKKYN 149


>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           
          Length = 458

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
 Frame = +1

Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV----SQGI----GFVCYETRQQAEDAIK 294
           +++Y+ +LP +  ++ L   F  FG ITN  +     +G+    GFV +E    A  AI+
Sbjct: 319 TSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRAIE 378


>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 631

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 504 RSERCTNISTVESCRRRTVEPSSCSVIRDRRSSHA 400
           + E+ T+    ESC +  VE S    I  R S+HA
Sbjct: 488 KDEKKTDTLDTESCVKELVESSMVGAIESRSSTHA 522


>At5g61450.1 68418.m07710 2-phosphoglycerate kinase-related contains
           weak similarity to 2-phosphoglycerate kinase (GI:467751)
           [Methanothermus fervidus]
          Length = 447

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 22  DAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLER 186
           D +KA      ++++G+ L  S  L+N ENK     D E +   +N   D+T ++
Sbjct: 228 DLKKAMKDGKPIIIEGRHLDPSIYLMNDENKTPSN-DPEKSSSETNSSKDLTSDK 281


>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
           protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 423

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
 Frame = +1

Query: 67  GKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV---- 234
           GK +++   +  P   +S        +++  +P  +  +     F  FG +   ++    
Sbjct: 108 GKQVEIKRTI--PRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDH 165

Query: 235 ----SQGIGFVCYETRQQAEDAIKHM 300
               S+G GFV YE    +ED + H+
Sbjct: 166 STGRSRGFGFVTYE----SEDMVDHL 187


>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 222

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHM 300
           LYI  +P       +   FS FG +   RV        S+  GF+ +E  + AE A   M
Sbjct: 62  LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121

Query: 301 N 303
           N
Sbjct: 122 N 122


>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 455

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
 Frame = +1

Query: 97  LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGF 252
           +NPE +          L+I  +  D   ERL   F  +G++  + +        ++G GF
Sbjct: 1   MNPEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGF 60

Query: 253 VCYETRQQAEDAI--KHM 300
           + +     AE  I  KH+
Sbjct: 61  IVFADPSVAERVIMDKHI 78


>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 404

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAI 291
           +Y++N+P DM  +RL   F  +G++    +        S+G     Y+T + A+ A+
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAAL 225


>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 404

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
 Frame = +1

Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAI 291
           +Y++N+P DM  +RL   F  +G++    +        S+G     Y+T + A+ A+
Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAAL 225


>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +1

Query: 7   YEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLER 186
           Y+     + A AA NG+ M  KTL V  A+   +  +  KP+ E  L  +     + L+R
Sbjct: 423 YQDPSVTDIACAALNGIKMGDKTLTVRRAI---QGAIQPKPEQEEVLLYAQ--QQIALQR 477

Query: 187 LNTLFSPFGNIT 222
           L  +F P G  T
Sbjct: 478 L--MFQPGGTPT 487


>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
           nearly identical to SC35-like splicing factor SCL33, 33
           kD [Arabidopsis thaliana] GI:9843659
          Length = 220

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
 Frame = +1

Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ--------GIGFVCYETRQQAED 285
           D  ++L + NL  D   E L   F  FG + +  + +        G GFV +     A D
Sbjct: 33  DLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAAD 92

Query: 286 AIKHMNG 306
           A  HM+G
Sbjct: 93  AKHHMDG 99


>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 506

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 396 TCRRSRSIFI-CVRFIRKLDDDGTRSRYWALSVHVFYCIFGLLPGLVAN 253
           +C  S  IF+     I KLD    RS    + +H+ YC F  +  L+ N
Sbjct: 350 SCCGSERIFVFTTNHIEKLDPALLRSGRMDMHIHMSYCTFSSVKILLRN 398


>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 451

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 61  MQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219
           +QG  +       NPEN        +  +Y+SN+  D+  ++L   FS FG I
Sbjct: 208 VQGNPVVAPAQHFNPEN-------VQRKIYVSNVSADIDPQKLLEFFSRFGEI 253


>At1g21312.1 68414.m02663 RNA recognition motif (RRM)-containing
           protein contains Pfam profile PF00076: RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain
          Length = 210

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 127 PDTESNLYISNLPPDMTLERLNTLFSPF 210
           PD  + LY+  LP + +   ++ +F PF
Sbjct: 108 PDVSNTLYVEGLPSNCSRREVSHIFRPF 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,088,258
Number of Sequences: 28952
Number of extensions: 230657
Number of successful extensions: 1020
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)

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