BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS302A06f (521 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 56 1e-08 At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 56 2e-08 At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 56 2e-08 At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 54 4e-08 At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 54 4e-08 At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 54 4e-08 At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 52 2e-07 At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 52 3e-07 At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 51 5e-07 At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 50 1e-06 At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 48 3e-06 At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 48 3e-06 At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 48 3e-06 At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 47 9e-06 At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 46 2e-05 At5g51300.2 68418.m06360 splicing factor-related contains simila... 46 2e-05 At5g51300.1 68418.m06359 splicing factor-related contains simila... 46 2e-05 At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 45 3e-05 At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 45 4e-05 At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 45 4e-05 At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 44 8e-05 At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 44 8e-05 At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 44 8e-05 At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 44 8e-05 At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 43 1e-04 At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 43 1e-04 At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 43 1e-04 At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 43 1e-04 At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 43 1e-04 At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 43 1e-04 At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 43 1e-04 At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 2e-04 At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 42 3e-04 At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 42 3e-04 At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 42 3e-04 At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 42 3e-04 At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 41 4e-04 At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 41 6e-04 At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 40 0.001 At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 40 0.001 At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 40 0.001 At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 40 0.001 At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 40 0.001 At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 39 0.002 At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 39 0.002 At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 38 0.003 At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 38 0.003 At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 38 0.003 At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 38 0.004 At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 38 0.004 At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 38 0.005 At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 38 0.005 At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 37 0.007 At1g27050.1 68414.m03298 homeobox-leucine zipper family protein ... 37 0.009 At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.012 At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 36 0.012 At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 36 0.012 At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 36 0.012 At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 36 0.012 At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 36 0.017 At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 36 0.017 At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 36 0.017 At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 36 0.017 At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 36 0.022 At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 36 0.022 At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.022 At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.022 At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 35 0.029 At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 35 0.029 At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 35 0.029 At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 35 0.038 At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 35 0.038 At2g47310.1 68415.m05906 flowering time control protein-related ... 35 0.038 At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 34 0.067 At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 34 0.067 At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 34 0.067 At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 33 0.088 At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 33 0.088 At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 33 0.088 At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 33 0.12 At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 33 0.12 At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 33 0.12 At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 33 0.12 At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 33 0.15 At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 33 0.15 At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 33 0.15 At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 33 0.15 At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 33 0.15 At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 32 0.20 At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 32 0.20 At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.20 At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.20 At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.20 At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 32 0.27 At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 32 0.27 At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 31 0.47 At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.47 At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 31 0.62 At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.62 At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 0.62 At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 30 0.82 At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 30 1.1 At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 30 1.1 At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 1.1 At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 29 1.4 At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 29 1.4 At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 29 1.4 At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 1.9 At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 29 1.9 At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 29 1.9 At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 29 1.9 At1g48090.2 68414.m05363 C2 domain-containing protein contains P... 29 1.9 At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 29 1.9 At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 29 1.9 At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 29 1.9 At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 29 1.9 At4g10610.1 68417.m01735 RNA-binding protein, putative 29 2.5 At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 29 2.5 At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 28 3.3 At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 28 3.3 At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 28 3.3 At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 28 3.3 At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 28 3.3 At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 28 4.4 At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 28 4.4 At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 28 4.4 At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 28 4.4 At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 28 4.4 At5g61450.1 68418.m07710 2-phosphoglycerate kinase-related conta... 27 5.8 At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 27 5.8 At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 27 5.8 At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 27 5.8 At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 27 5.8 At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 27 5.8 At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 27 5.8 At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 27 5.8 At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 27 7.7 At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 27 7.7 At1g21312.1 68414.m02663 RNA recognition motif (RRM)-containing ... 27 7.7 >At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2) non-consensus TA donor splice site at exon 2, polyadenylate-binding protein - Triticum aestivum (common wheat),PIR:T06979 Length = 443 Score = 56.4 bits (130), Expect = 1e-08 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 19/122 (15%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTE------------SN 144 V +E +DA +A + NG K V A E + + E SN Sbjct: 74 VNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSN 133 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303 LY+ NL P ++ E+L +FSPFG +T+S+V S+G GFV + T ++A +A+ ++ Sbjct: 134 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 193 Query: 304 GQ 309 G+ Sbjct: 194 GK 195 Score = 39.9 bits (89), Expect = 0.001 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%) Frame = +1 Query: 55 LLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 234 +L+ K + V L E + +N+Y+ NL T + L F +G IT++ V Sbjct: 1 MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 60 Query: 235 -------SQGIGFVCYETRQQAEDAIKHMNG 306 S+G GFV +E A A++ +NG Sbjct: 61 MKDGEGKSKGFGFVNFENADDAARAVESLNG 91 >At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa subunit) {Homo sapiens}; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 363 Score = 55.6 bits (128), Expect = 2e-08 Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 9/112 (8%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180 +EY EDA+ A N + + GK ++V+ A ++K S D +NL+I NL PD+ Sbjct: 71 IEYRSEEDADYAIKVLNMIKLHGKPIRVNKA---SQDKKSL--DVGANLFIGNLDPDVDE 125 Query: 181 ERLNTLFSPFGNI-TNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309 + L FS FG I +N ++ S+G GF+ Y++ + ++ AI+ M GQ Sbjct: 126 KLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQ 177 Score = 27.9 bits (59), Expect = 4.4 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Frame = +1 Query: 118 SHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQ 273 S + + ++ +Y+ L ++ E L LF G + N + + Q GF+ Y + + Sbjct: 18 SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77 Query: 274 QAEDAIKHMN 303 A+ AIK +N Sbjct: 78 DADYAIKVLN 87 >At1g49760.1 68414.m05580 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from [Nicotiana tabacum] Length = 671 Score = 55.6 bits (128), Expect = 2e-08 Identities = 42/122 (34%), Positives = 57/122 (46%), Gaps = 19/122 (15%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTE------------SN 144 V +E +DA +A A NG K V A E + K E SN Sbjct: 269 VNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSN 328 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITN-------SRVSQGIGFVCYETRQQAEDAIKHMN 303 LY+ NL +T ++L F+PFG IT+ S VS+G GFV + T ++A AI MN Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388 Query: 304 GQ 309 G+ Sbjct: 389 GK 390 Score = 53.2 bits (122), Expect = 1e-07 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 7/109 (6%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180 V Y +DA +A N + + G+ ++V +++ +P S + N++I NL + Sbjct: 91 VNYATPQDASRALNELNFMALNGRAIRVMYSVRDP----SLRKSGVGNIFIKNLDKSIDH 146 Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306 + L+ FS FG I + +V S+G GFV Y+T + A+ AI +NG Sbjct: 147 KALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNG 195 Score = 49.6 bits (113), Expect = 1e-06 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 7/110 (6%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180 V+Y+ E A+ A NG+L+ K + V + + S + +N+Y+ NL ++ Sbjct: 178 VQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSD 237 Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQ 309 E LN +F FG T+ + S+G GFV +E A A+ +NG+ Sbjct: 238 EELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGK 287 >At2g36660.1 68415.m04496 polyadenylate-binding protein, putative / PABP, putative Length = 609 Score = 54.4 bits (125), Expect = 4e-08 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 19/122 (15%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFA--------LLNPENKVSHKPDTE----SN 144 V ++ EDA +A NG K L V A LL + K H+ SN Sbjct: 246 VNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSN 305 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303 +Y+ N+ +T E L FS G IT++++ S+G GFVC+ T ++A DA+K + Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365 Query: 304 GQ 309 GQ Sbjct: 366 GQ 367 Score = 47.6 bits (108), Expect = 5e-06 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 7/102 (6%) Frame = +1 Query: 19 EDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTL 198 +DA A N L+ GK ++V +++ P+ + + N+++ NLP +T L + Sbjct: 76 QDANLAIEKKNNSLLNGKMIRVMWSVRAPDAR----RNGVGNVFVKNLPESVTNAVLQDM 131 Query: 199 FSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303 F FGNI + +V S+G GFV +E A AI+ +N Sbjct: 132 FKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173 Score = 40.7 bits (91), Expect = 6e-04 Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 8/110 (7%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTE-SNLYISNLPPDMT 177 V++E+ + A A N ++ K + V + ++V KP+ + +NLY+ NL D++ Sbjct: 157 VQFEQEDAAHAAIQTLNSTIVADKEIYVG-KFMKKTDRV--KPEEKYTNLYMKNLDADVS 213 Query: 178 LERLNTLFSPFGNITN-------SRVSQGIGFVCYETRQQAEDAIKHMNG 306 + L F+ FG I + +R+ +G FV ++ + A A + +NG Sbjct: 214 EDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNG 263 >At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to 29 kDa ribonucleoprotein chloroplast precursor {Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) contains an AG-donor site at intron. Length = 258 Score = 54.4 bits (125), Expect = 4e-08 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 8/88 (9%) Frame = +1 Query: 67 GKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV---- 234 G+ LKV+FA NK P+TE L++ NL +T E L F G++ +RV Sbjct: 153 GRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDG 212 Query: 235 ----SQGIGFVCYETRQQAEDAIKHMNG 306 S+G GFVCY ++ + E A++ ++G Sbjct: 213 DTGRSRGYGFVCYSSKAEMETALESLDG 240 >At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) Length = 660 Score = 54.4 bits (125), Expect = 4e-08 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 9/111 (8%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTE--SNLYISNLPPDM 174 V++EK E A+ A NG+LM K + V + E T +N+Y+ NLP ++ Sbjct: 181 VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEI 240 Query: 175 TLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306 + L F FG I+++ V S+ GFV +E + A A++ MNG Sbjct: 241 GEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNG 291 Score = 50.4 bits (115), Expect = 7e-07 Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 7/64 (10%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKH 297 +NLY+ NL + E+L +FS +GN+T+S+V S+G GFV Y ++A A+ Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSE 391 Query: 298 MNGQ 309 MNG+ Sbjct: 392 MNGK 395 Score = 45.6 bits (103), Expect = 2e-05 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180 + + DA +A A N + + +++ + +P ++S K N++I NL + Sbjct: 94 INFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGK----GNIFIKNLDASIDN 149 Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306 + L FS FG I + +V S+G GFV +E + A+ AI +NG Sbjct: 150 KALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198 >At2g23350.1 68415.m02788 polyadenylate-binding protein, putative / PABP, putative Length = 662 Score = 52.0 bits (119), Expect = 2e-07 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 7/110 (6%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180 V Y +DAEKA N + GK ++++++ S + NL++ NL + Sbjct: 92 VNYSNTDDAEKAMQKLNYSYLNGKMIRITYS----SRDSSARRSGVGNLFVKNLDKSVDN 147 Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQ 309 + L+ FS G I + +V S+G GFV ++T A++AI+ +NG+ Sbjct: 148 KTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGK 197 Score = 49.2 bits (112), Expect = 2e-06 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 19/122 (15%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKV--SHKPDTES----------N 144 V +E EDA +A A NG K V A E ++ S + + S N Sbjct: 270 VNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLN 329 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMN 303 LY+ NL +T E+L LF+ FG IT+ +V S+G GFV + +A + MN Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389 Query: 304 GQ 309 G+ Sbjct: 390 GK 391 Score = 45.6 bits (103), Expect = 2e-05 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 7/110 (6%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180 V+++ + A+ A NG ++ K + V L E + + +N+Y+ NL T Sbjct: 179 VQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTD 238 Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQ 309 + L T F +G+I+++ V S+ GFV +E + A A++ +NG+ Sbjct: 239 DELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGK 288 >At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5) identical to GB:Q05196 from [Arabidopsis thaliana] Length = 668 Score = 51.6 bits (118), Expect = 3e-07 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 9/111 (8%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDM 174 V++EK E A+ A NG+L+ K + V + + S S N+Y+ NLP ++ Sbjct: 177 VQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEI 236 Query: 175 TLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306 T + L F +G+I+++ V S+ GFV + + + A A++ MNG Sbjct: 237 TDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNG 287 Score = 50.8 bits (116), Expect = 5e-07 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 7/64 (10%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKH 297 SNLY+ NL + E+L +FS +GN+T+ +V S+G GFV Y ++A A+K Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 387 Query: 298 MNGQ 309 MNG+ Sbjct: 388 MNGK 391 Score = 48.0 bits (109), Expect = 4e-06 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 7/109 (6%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180 V + EDA +A + N ++ + +++ + +P ++S K N++I NL + Sbjct: 90 VNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGK----GNVFIKNLDASIDN 145 Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306 + L FS FG I + +V S+G GFV +E + A+ AI +NG Sbjct: 146 KALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 194 >At3g16380.1 68416.m02074 polyadenylate-binding protein, putative / PABP, putative similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens} SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 537 Score = 50.8 bits (116), Expect = 5e-07 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 18/120 (15%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPEN------KVSH----KPDTE-SNL 147 V + E+A+KA + GL + K L V AL E K S KP+ SNL Sbjct: 247 VNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNL 306 Query: 148 YISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306 Y+ NL M RL +F +G I +++V S+G GFVC+ ++++ A +++NG Sbjct: 307 YVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNG 366 Score = 50.0 bits (114), Expect = 9e-07 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 7/109 (6%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTL 180 V+++ + A AR+A +G ++ GK L V+ + E +N+Y+ NL +T Sbjct: 156 VQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTD 215 Query: 181 ERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNG 306 + L+TLFS +G +++ V S+G GFV + + A+ A++ + G Sbjct: 216 DCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCG 264 Score = 46.4 bits (105), Expect = 1e-05 Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 9/125 (7%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES---NLYISNLPPD 171 + ++ A A N ++GK +++ ++ + ++++ T + NLY+ NL Sbjct: 67 INFDSPFSASNAMTRLNHSDLKGKAMRIMWS----QRDLAYRRRTRTGFANLYVKNLDSS 122 Query: 172 MTLERLNTLFSPFGNITNSRV------SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGA 333 +T L +F PFG+I + +V S+G GFV ++T Q A A ++G + G Sbjct: 123 ITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSM-VYGKKL 181 Query: 334 VIVKF 348 + KF Sbjct: 182 FVAKF 186 >At3g14100.1 68416.m01782 oligouridylate-binding protein, putative similar to GB:CAB75429 (GI:6996560) from [Nicotiana plumbaginifolia], contains Pfam profiles: PF00076 RNA recognition motif (3 copies) Length = 427 Score = 49.6 bits (113), Expect = 1e-06 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDM 174 V Y A A + NG + G+ +KV++A + + DT S N+++ +L P++ Sbjct: 101 VHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQRE-----DTSSHFNIFVGDLSPEV 155 Query: 175 TLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309 T L FS F + +++RV S+G GFV + +Q A+ AI MNG+ Sbjct: 156 TDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 208 Score = 32.3 bits (70), Expect = 0.20 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Frame = +1 Query: 127 PDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV----SQGIGFVCYETRQQAEDAIK 294 P T ++Y+ N+ +T L +F+ G + +S++ GFV Y R+ A AI Sbjct: 55 PSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAIL 114 Query: 295 HMNGQ 309 +NG+ Sbjct: 115 SLNGR 119 Score = 31.9 bits (69), Expect = 0.27 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQ--GIGFVCYETRQQAEDAIKHMNG 306 + +Y+ NL P++T L+ F G I RV + G GFV Y T +A AI+ N Sbjct: 265 TTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNT 324 Query: 307 Q 309 Q Sbjct: 325 Q 325 >At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 289 Score = 48.4 bits (110), Expect = 3e-06 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 11/108 (10%) Frame = +1 Query: 19 EDAEKARAAFNGLLMQGKTLKVSFAL---LNPENKVSHKPDTESNLYISNLPPDMTLERL 189 E+AEKA FN + G+ L V+ A PE + D +Y+ NLP D+ RL Sbjct: 165 EEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQ-PRVYDAAFRIYVGNLPWDVDSGRL 223 Query: 190 NTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309 LFS G + ++RV S+G GFV + AI ++GQ Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQ 271 >At1g54080.1 68414.m06162 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 426 Score = 48.4 bits (110), Expect = 3e-06 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 10/113 (8%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDM 174 V Y A A NG + G+ +KV++A + + DT S N+++ +L P++ Sbjct: 105 VHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQRE-----DTSSHFNIFVGDLSPEV 159 Query: 175 TLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309 T L FS F + +++RV S+G GFV + +Q A+ AI MNG+ Sbjct: 160 TDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 212 Score = 35.1 bits (77), Expect = 0.029 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Frame = +1 Query: 97 LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQ--GIGFVCYE 264 L+ E+ + P + +Y+ NL P++T L+ LF G I RV + G GFV Y Sbjct: 256 LSNEDAPENNPQF-TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYN 314 Query: 265 TRQQAEDAIKHMNGQ 309 T +A AI+ N Q Sbjct: 315 THDEAALAIQMGNAQ 329 >At1g34140.1 68414.m04235 polyadenylate-binding protein, putative / PABP, putative non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from [Triticum aestivum] GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis thaliana} SP|P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 407 Score = 48.4 bits (110), Expect = 3e-06 Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 20/123 (16%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFAL--LNPENKVSHKPDTES----------- 141 V +EK E A A NG+++ K L V A N + K + E Sbjct: 164 VNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGM 223 Query: 142 NLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHM 300 NLY+ NL + +L LFS FG IT+ +V S+G+GFV + T ++A A+ M Sbjct: 224 NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKM 283 Query: 301 NGQ 309 NG+ Sbjct: 284 NGK 286 Score = 37.9 bits (84), Expect = 0.004 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 7/89 (7%) Frame = +1 Query: 61 MQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN----- 225 ++GK +++ F+ +P N++S + N+++ NL + ++L +FS FG + + Sbjct: 9 LKGKPMRIMFSERDPSNRMSGR----GNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVAR 64 Query: 226 --SRVSQGIGFVCYETRQQAEDAIKHMNG 306 S VS+G GFV + + A NG Sbjct: 65 DASGVSKGYGFVQFYSDLSVYTACNFHNG 93 Score = 37.5 bits (83), Expect = 0.005 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 7/63 (11%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKH 297 +N+Y+ NL T L LF FG IT++ V S+ GFV +E + A AI+ Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178 Query: 298 MNG 306 MNG Sbjct: 179 MNG 181 Score = 27.9 bits (59), Expect = 4.4 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKV 117 VE+ E+A KA NG ++ K + VS A ++K+ Sbjct: 268 VEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKL 306 >At3g19130.1 68416.m02429 RNA-binding protein, putative similar to RNA Binding Protein 47 [Nicotiana plumbaginifolia] GI:9663769, DNA binding protein ACBF GB:AAC49850 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 435 Score = 46.8 bits (106), Expect = 9e-06 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%) Frame = +1 Query: 133 TESNLYISNLPPDMTLERLNTLFSPFGNITNSR--VSQGIGFVCYETRQQAEDAIKHMNG 306 T + +++ + PD+ E L FS FG + + + V +G GFV + R+ AEDAI+ +NG Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNG 378 Score = 32.3 bits (70), Expect = 0.20 Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 11/113 (9%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174 VE+ AE+ ++G +M + ++++A + K + + + ++++ +L PD+ Sbjct: 154 VEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDV 213 Query: 175 TLERLNTLFSP-FGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306 T L+ FS + ++ +++V S+G GFV + + A+ MNG Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNG 266 >At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein ACBF GB:U90212 GI:1899187 from [Nicotiana tabacum] Length = 445 Score = 46.0 bits (104), Expect = 2e-05 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Frame = +1 Query: 115 VSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSR--VSQGIGFVCYETRQQAEDA 288 +S S +++ L D+T E L FS FG + + + V +G GFV + RQ AE+A Sbjct: 319 MSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEA 378 Query: 289 IKHMNG 306 I ++NG Sbjct: 379 IGNLNG 384 Score = 33.5 bits (73), Expect = 0.088 Identities = 25/113 (22%), Positives = 55/113 (48%), Gaps = 11/113 (9%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174 VE+ AE+A +F+G+ M + ++++A + K + + + ++++ +L PD+ Sbjct: 165 VEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDV 224 Query: 175 T-LERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306 + L T + ++ ++V S+G GFV + + A+ MNG Sbjct: 225 SDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNG 277 Score = 27.1 bits (57), Expect = 7.7 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 8/67 (11%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285 D L++ +L M L+T FS +++ +V S+G GFV + +R AE+ Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175 Query: 286 AIKHMNG 306 A++ +G Sbjct: 176 ALQSFSG 182 >At5g51300.2 68418.m06360 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 45.6 bits (103), Expect = 2e-05 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 8/73 (10%) Frame = +1 Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYET 267 K K E+NLYI LPP + + L LFS FG I ++V S+G GFV Y Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530 Query: 268 RQQAEDAIKHMNG 306 Q A A++ MNG Sbjct: 531 VQMANTAVQAMNG 543 >At5g51300.1 68418.m06359 splicing factor-related contains similarity to SF1 protein [Drosophila melanogaster] GI:6687400 Length = 804 Score = 45.6 bits (103), Expect = 2e-05 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 8/73 (10%) Frame = +1 Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYET 267 K K E+NLYI LPP + + L LFS FG I ++V S+G GFV Y Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530 Query: 268 RQQAEDAIKHMNG 306 Q A A++ MNG Sbjct: 531 VQMANTAVQAMNG 543 >At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to SP|P19684 33 kDa ribonucleoprotein, chloroplast precursor {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 308 Score = 45.2 bits (102), Expect = 3e-05 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 17/114 (14%) Frame = +1 Query: 19 EDAEKARAAFNGLLMQGKTLKVSFALL-------NPENKVSHKP-DTESNLYISNLPPDM 174 E+A+ A F+ + G+ + VSFA +P + S P DT LY+SNL Sbjct: 146 EEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKA 205 Query: 175 TLERLNTLFSPFG-NITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309 L LF+ N ++RV S G GFV + TR++AE+AI +NG+ Sbjct: 206 RSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGK 259 >At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 292 Score = 44.8 bits (101), Expect = 4e-05 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Frame = +1 Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRVS--------QGIGFVCYETRQQAEDAI 291 ES +++ L D+T +L + F +G IT ++ +G GF+ + R+ A+DAI Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70 Query: 292 KHMNGQ 309 KHM+G+ Sbjct: 71 KHMHGR 76 >At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative similar to RNA binding protein(RZ-1) GI:1435061 from [Nicotiana sylvestris]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 292 Score = 44.8 bits (101), Expect = 4e-05 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 8/66 (12%) Frame = +1 Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRVS--------QGIGFVCYETRQQAEDAI 291 ES +++ L D+T +L + F +G IT ++ +G GF+ + R+ A+DAI Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70 Query: 292 KHMNGQ 309 KHM+G+ Sbjct: 71 KHMHGR 76 >At4g03110.2 68417.m00421 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 439 Score = 43.6 bits (98), Expect = 8e-05 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 7/98 (7%) Frame = +1 Query: 70 KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV----- 234 KTL + +LL + E L++ LP +++ + +LFS +G I + ++ Sbjct: 83 KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQ 142 Query: 235 --SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGAVIV 342 S+G F+ YET++QA A++ +NG+ + G+ +V Sbjct: 143 QTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLV 180 Score = 36.3 bits (80), Expect = 0.012 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 9/90 (10%) Frame = +1 Query: 106 ENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFG-----NITN---SRVSQGIGFVCY 261 EN+ ++ + L++ +P M+ +L TLF F NI +R S+G F+ Sbjct: 7 ENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLC 66 Query: 262 ETRQQAEDAIKHMNGQCPIPGAGAVI-VKF 348 +R++A+ + + + +PGA +++ VK+ Sbjct: 67 PSREEADKLVNACHNKKTLPGANSLLQVKY 96 >At4g03110.1 68417.m00420 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3 like factor 3 [Homo sapiens] GI:12746392; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 441 Score = 43.6 bits (98), Expect = 8e-05 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 7/98 (7%) Frame = +1 Query: 70 KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV----- 234 KTL + +LL + E L++ LP +++ + +LFS +G I + ++ Sbjct: 83 KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQ 142 Query: 235 --SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGAVIV 342 S+G F+ YET++QA A++ +NG+ + G+ +V Sbjct: 143 QTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLV 180 Score = 37.5 bits (83), Expect = 0.005 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 8/65 (12%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294 +NL+I N+P + + L F FG + +++V S+ GFV Y+++ A++AI Sbjct: 349 ANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAID 408 Query: 295 HMNGQ 309 MNG+ Sbjct: 409 MMNGR 413 Score = 36.3 bits (80), Expect = 0.012 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 9/90 (10%) Frame = +1 Query: 106 ENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFG-----NITN---SRVSQGIGFVCY 261 EN+ ++ + L++ +P M+ +L TLF F NI +R S+G F+ Sbjct: 7 ENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLC 66 Query: 262 ETRQQAEDAIKHMNGQCPIPGAGAVI-VKF 348 +R++A+ + + + +PGA +++ VK+ Sbjct: 67 PSREEADKLVNACHNKKTLPGANSLLQVKY 96 >At1g03457.2 68414.m00327 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 438 Score = 43.6 bits (98), Expect = 8e-05 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294 +NL+I N+P + + L F PFG + +++V S+ GF+ Y+++ A++AI Sbjct: 339 ANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398 Query: 295 HMNGQCPIPG 324 MNG C + G Sbjct: 399 TMNG-CQLSG 407 Score = 39.5 bits (88), Expect = 0.001 Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 13/123 (10%) Frame = +1 Query: 19 EDAEKARAAF-NGLLMQGKT--LKVSFA--LLNPENKVSHKPDTESNLYISNLPPDMTLE 183 EDA+K +F N + G + L+V +A L + + + E L++ LP +++ Sbjct: 64 EDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSET 123 Query: 184 RLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGA-VI 339 + +LFS +G I + ++ S+G F+ YE+++QA A++ +NG+ + GA +I Sbjct: 124 EVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLI 183 Query: 340 VKF 348 VK+ Sbjct: 184 VKW 186 Score = 30.7 bits (66), Expect = 0.62 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 9/77 (11%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAIKHM 300 L++ +P MT +L TLF F + +R +G F+ TR+ A+ I Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73 Query: 301 NGQCPIPGAGAVI-VKF 348 + + +PGA + + VK+ Sbjct: 74 HNKKTLPGASSPLQVKY 90 >At1g03457.1 68414.m00326 RNA-binding protein, putative similar to Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding protein [Homo sapiens] GI:15341327; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 429 Score = 43.6 bits (98), Expect = 8e-05 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294 +NL+I N+P + + L F PFG + +++V S+ GF+ Y+++ A++AI Sbjct: 330 ANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389 Query: 295 HMNGQCPIPG 324 MNG C + G Sbjct: 390 TMNG-CQLSG 398 Score = 40.7 bits (91), Expect = 6e-04 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 8/118 (6%) Frame = +1 Query: 19 EDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTL 198 EDA+K +F+ KTL + + L + E L++ LP +++ + +L Sbjct: 64 EDADKVINSFHNK----KTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQSL 119 Query: 199 FSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIKHMNGQCPIPGAGA-VIVKF 348 FS +G I + ++ S+G F+ YE+++QA A++ +NG+ + GA +IVK+ Sbjct: 120 FSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKW 177 Score = 30.7 bits (66), Expect = 0.62 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 9/77 (11%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAIKHM 300 L++ +P MT +L TLF F + +R +G F+ TR+ A+ I Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73 Query: 301 NGQCPIPGAGAVI-VKF 348 + + +PGA + + VK+ Sbjct: 74 HNKKTLPGASSPLQVKY 90 >At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing protein low similarity to RNA-binding protein RGP-3 [Nicotiana sylvestris] GI:1009363; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 156 Score = 43.2 bits (97), Expect = 1e-04 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 12/86 (13%) Frame = +1 Query: 88 FALLNP--ENKVSHKPDTE--SNLYISNLPPDMTLERLNTLFSPFGNITNSRV------- 234 F+ L+P E++ +P E +NL++S L T E L T F+ FG + +++V Sbjct: 35 FSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSG 94 Query: 235 -SQGIGFVCYETRQQAEDAIKHMNGQ 309 S+G GFV Y T + + I M+G+ Sbjct: 95 YSKGFGFVRYATLEDSAKGIAGMDGK 120 >At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing protein low similarity to glycine-rich RNA-binding protein [Euphorbia esula] GI:2645699; contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 337 Score = 43.2 bits (97), Expect = 1e-04 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 7/67 (10%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGN-----ITNSRVSQG--IGFVCYETRQQAEDA 288 D +++Y+ LP D+T E + +FS +G+ I N R +G GFV + R+ A+DA Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDA 63 Query: 289 IKHMNGQ 309 I+ M+G+ Sbjct: 64 IEDMDGK 70 >At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 126 Score = 42.7 bits (96), Expect = 1e-04 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 8/74 (10%) Frame = +1 Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYET 267 + S P + S+L++ ++ RL +FS FG +TN +R S G G+V + + Sbjct: 49 EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 108 Query: 268 RQQAEDAIKHMNGQ 309 ++ A+ A++ MNG+ Sbjct: 109 KEDAQSAVEAMNGK 122 >At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 172 Score = 42.7 bits (96), Expect = 1e-04 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 8/74 (10%) Frame = +1 Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYET 267 + S P + S+L++ ++ RL +FS FG +TN +R S G G+V + + Sbjct: 68 EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNS 127 Query: 268 RQQAEDAIKHMNGQ 309 ++ A+ A++ MNG+ Sbjct: 128 KEDAQSAVEAMNGK 141 >At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing protein similar to SP|P52298 20 kDa nuclear cap binding protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting protein 1) (NIP1) {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 124 Score = 42.7 bits (96), Expect = 1e-04 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 5/65 (7%) Frame = +1 Query: 127 PDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-----SQGIGFVCYETRQQAEDAI 291 P+ LY+ NLP ++T E + +F +G I R+ ++G FV YE A++A+ Sbjct: 15 PEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAV 74 Query: 292 KHMNG 306 H++G Sbjct: 75 DHLSG 79 >At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 783 Score = 42.7 bits (96), Expect = 1e-04 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 10/108 (9%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKV---SHKPDTESNLYISNLPPD 171 VE++ E A G ++ G L + F +KV S+K + L++ N+ + Sbjct: 620 VEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFE 679 Query: 172 MTLERLNTLFSPFGNITNSRVSQ-------GIGFVCYETRQQAEDAIK 294 T L LFSPFG I + R+ + G FV + T+Q+A +A K Sbjct: 680 ATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKK 727 Score = 27.1 bits (57), Expect = 7.7 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 8/61 (13%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNIT--------NSRVSQGIGFVCYETRQQAEDAIKHM 300 L++ NLP T E L FS FG I+ ++ S+GI ++ Y + A A++ + Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 322 Query: 301 N 303 + Sbjct: 323 D 323 >At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing protein low similarity to splicing factor SC35 [Arabidopsis thaliana] GI:9843653; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 261 Score = 42.7 bits (96), Expect = 1e-04 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 8/67 (11%) Frame = +1 Query: 133 TESNLYISNLPPDMTLERLNTLFSPFGNIT--------NSRVSQGIGFVCYETRQQAEDA 288 ++S LY+SNL +T ++TLFS FG + ++R S+G+ FV Y +R+ A A Sbjct: 55 SKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKA 114 Query: 289 IKHMNGQ 309 + M+ + Sbjct: 115 ARSMDAK 121 >At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana] ; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 87 Score = 42.3 bits (95), Expect = 2e-04 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 8/65 (12%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294 + +Y+ NL P T + L FS +GN+ ++ V S+G GFV Y + +AE A+ Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62 Query: 295 HMNGQ 309 M+G+ Sbjct: 63 GMDGK 67 >At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative similar to SP|Q04836 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 329 Score = 41.9 bits (94), Expect = 3e-04 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 11/108 (10%) Frame = +1 Query: 19 EDAEKARAAFNGLLMQGKTLKVSFAL---LNPENKVSHKPDTESNLYISNLPPDMTLERL 189 ++AE A FN + G+ L V+ A PE + + +Y+ NLP D+ RL Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPE-RAPRVYEPAFRVYVGNLPWDVDNGRL 260 Query: 190 NTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309 LFS G + +RV S+G GFV + +AI ++GQ Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQ 308 >At4g16280.3 68417.m02471 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 533 Score = 41.9 bits (94), Expect = 3e-04 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Frame = +1 Query: 1 VEYEKHEDAEKA-RAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMT 177 V+Y +DA++A RA N + + G T V + E + E L++ +L T Sbjct: 166 VKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERE--RIGTLEFKLFVGSLNKQAT 223 Query: 178 LERLNTLFSPFGNITNS-------RVSQGIGFVCYETRQQAEDAIKHMNGQCPIPGAG-A 333 + + +F FG++ + R S+G GFV Y +++ A AI +NG + G Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 283 Query: 334 VIVKF 348 +IV+F Sbjct: 284 LIVRF 288 >At4g16280.2 68417.m02470 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 747 Score = 41.9 bits (94), Expect = 3e-04 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%) Frame = +1 Query: 1 VEYEKHEDAEKA-RAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMT 177 V+Y +DA++A RA N + + G T V + E + E L++ +L T Sbjct: 166 VKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERE--RIGTLEFKLFVGSLNKQAT 223 Query: 178 LERLNTLFSPFGNITNS-------RVSQGIGFVCYETRQQAEDAIKHMNGQCPIPGAG-A 333 + + +F FG++ + R S+G GFV Y +++ A AI +NG + G Sbjct: 224 EKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 283 Query: 334 VIVKF 348 +IV+F Sbjct: 284 LIVRF 288 >At1g54080.2 68414.m06163 oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia] Length = 430 Score = 41.5 bits (93), Expect = 3e-04 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 14/117 (11%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDM 174 V Y A A NG + G+ +KV++A + + DT S N+++ +L P++ Sbjct: 105 VHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQRE-----DTSSHFNIFVGDLSPEV 159 Query: 175 TLERLNTLFSPFGNITN----SRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309 T L FS F + ++ +RV S+G GFV + +Q A+ AI MNG+ Sbjct: 160 TDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 216 Score = 35.1 bits (77), Expect = 0.029 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%) Frame = +1 Query: 97 LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQ--GIGFVCYE 264 L+ E+ + P + +Y+ NL P++T L+ LF G I RV + G GFV Y Sbjct: 260 LSNEDAPENNPQF-TTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYN 318 Query: 265 TRQQAEDAIKHMNGQ 309 T +A AI+ N Q Sbjct: 319 THDEAALAIQMGNAQ 333 >At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative Length = 425 Score = 41.1 bits (92), Expect = 4e-04 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 11/113 (9%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGK--TLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174 +E+ H AE+ +NG M G T ++++A KV PD ++++ +L PD+ Sbjct: 70 IEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPD--HSIFVGDLAPDV 127 Query: 175 TLERLNTLFSP-FGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306 T L F + ++ ++V S+G GFV + + A+ MNG Sbjct: 128 TDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNG 180 >At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing protein low similarity to enhancer binding protein-1; EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 304 Score = 40.7 bits (91), Expect = 6e-04 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 13/116 (11%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHK----PDTESNLYISNLPP 168 +E E+A A + +G+ LKV +A + + + P NL+++NL Sbjct: 139 IEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAF 198 Query: 169 DMTLERLNTLF-SPFGNIT--------NSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309 + + L F + GN+ N R S G GFV ++T++QAE A+ G+ Sbjct: 199 EARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGK 254 >At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 310 Score = 39.9 bits (89), Expect = 0.001 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 11/113 (9%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174 VE+E H+ A+K FNG M + ++++A + K + ++++ +L PD+ Sbjct: 149 VEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDV 208 Query: 175 TLERLNTLFS-PFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306 + L+ FS + ++ ++V S+G GFV + + A+ MNG Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261 Score = 27.1 bits (57), Expect = 7.7 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +1 Query: 223 NSRVSQGIGFVCYETRQQAEDAIKHMNG 306 N+ +S+G GFV +E+ A+ ++ NG Sbjct: 139 NNGLSEGYGFVEFESHDVADKVLREFNG 166 >At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 432 Score = 39.9 bits (89), Expect = 0.001 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 11/113 (9%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174 VE+E H+ A+K FNG M + ++++A + K + ++++ +L PD+ Sbjct: 149 VEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDV 208 Query: 175 TLERLNTLFS-PFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306 + L+ FS + ++ ++V S+G GFV + + A+ MNG Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261 Score = 39.1 bits (87), Expect = 0.002 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Frame = +1 Query: 49 NGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNS 228 NG QG + + L PE + + + +++ L +T E L F+ FG I + Sbjct: 280 NGYQQQGGYMP-NGTLTRPEGDIMN-----TTIFVGGLDSSVTDEDLKQPFNEFGEIVSV 333 Query: 229 R--VSQGIGFVCYETRQQAEDAIKHMNG 306 + V +G GFV + R AE+A++ +NG Sbjct: 334 KIPVGKGCGFVQFVNRPNAEEALEKLNG 361 Score = 27.1 bits (57), Expect = 7.7 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +1 Query: 223 NSRVSQGIGFVCYETRQQAEDAIKHMNG 306 N+ +S+G GFV +E+ A+ ++ NG Sbjct: 139 NNGLSEGYGFVEFESHDVADKVLREFNG 166 >At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative contains similarity to polyadenylate-binding protein 5 Length = 387 Score = 39.5 bits (88), Expect = 0.001 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 11/114 (9%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174 +E+ H AE+ +NG M +T ++++A K + +++ +L P++ Sbjct: 106 IEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEV 165 Query: 175 TLERLNTLF-SPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNGQ 309 T L+ F + +G++ ++V S+G GFV + + A+ MNGQ Sbjct: 166 TDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQ 219 Score = 36.3 bits (80), Expect = 0.012 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQG--IGFVCYETRQQAEDAIKHMNG 306 + +++ L ++T + L ++F FG + + ++ G GFV Y + AE A+ +NG Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNG 317 >At5g06000.1 68418.m00665 eukaryotic translation initiation factor 3G, putative / eIF3g, putative similar to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 276 Score = 39.5 bits (88), Expect = 0.001 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Frame = +1 Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAI 291 E+++ ++NL D L LF PFG +T V S+G GFV + +R+ A+ AI Sbjct: 173 ENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232 Query: 292 KHMNG 306 +NG Sbjct: 233 NKLNG 237 >At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative similar to DNA binding protein GI:1899187 from [Nicotiana tabacum] Length = 434 Score = 39.5 bits (88), Expect = 0.001 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSR--VSQGIGFVCYETRQQAEDAIKHMNG 306 + +++ L +T E L FS FG I + + V +G GFV + R AE+A++ +NG Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNG 363 Score = 38.7 bits (86), Expect = 0.002 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 11/113 (9%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174 VE+E H+ A+K FNG M + ++++A + K + ++++ +L PD+ Sbjct: 151 VEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDV 210 Query: 175 TLERLNTLFS-PFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306 + L+ FS + ++ ++V S+G GFV + + A+ MNG Sbjct: 211 SDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 263 >At3g11400.1 68416.m01390 eukaryotic translation initiation factor 3G / eIF3g nearly identical to eukaryotic translation initiation factor 3g [Arabidopsis thaliana] GI:12407751 Length = 294 Score = 39.1 bits (87), Expect = 0.002 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 8/65 (12%) Frame = +1 Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAI 291 E+++ ++NL D L LF PFG +T + VS+G GFV + +R+ A+ AI Sbjct: 212 ENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271 Query: 292 KHMNG 306 +NG Sbjct: 272 NKLNG 276 >At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, putative similar to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 250 Score = 38.7 bits (86), Expect = 0.002 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +1 Query: 142 NLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIK 294 ++Y+ N D L LFS FG + + G FV +E + AEDAI+ Sbjct: 3 HVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIR 53 >At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial (RPS19) Length = 212 Score = 38.3 bits (85), Expect = 0.003 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294 + LYI L P L FS F +T +RV S+G GFV + + A AI Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90 Query: 295 HMNGQ 309 MNGQ Sbjct: 91 AMNGQ 95 >At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31 (RSP31) identical to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana} Length = 264 Score = 38.3 bits (85), Expect = 0.003 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Frame = +1 Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIK 294 L++ N P T E + F P+G +TN R+ + FV +ET++ A A++ Sbjct: 95 LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALE 145 >At3g46020.1 68416.m04979 RNA-binding protein, putative similar to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis}; SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 102 Score = 38.3 bits (85), Expect = 0.003 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294 + L++S L T + L LFSPFG I +R+ +G GF+ +++ A A+K Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66 Query: 295 HMNGQ 309 ++G+ Sbjct: 67 SLDGK 71 >At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to chloroplast RNA-binding protein (cp33) GB:BAA06523 (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539 (1995)); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 329 Score = 37.9 bits (84), Expect = 0.004 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 19/115 (16%) Frame = +1 Query: 19 EDAEKARAAFNGLLMQGKTLKVSFALL--NPENKVSHKPDTESN---------LYISNLP 165 E+A++A FN + G+T+KV+F + EN+V ++N +Y NL Sbjct: 168 EEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLG 227 Query: 166 PDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHMNG 306 ++T + L F + ++V S+G GF+ +E+ + + A+ MNG Sbjct: 228 WNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNG 282 Score = 35.1 bits (77), Expect = 0.029 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 8/74 (10%) Frame = +1 Query: 106 ENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCY 261 E + + E LY+ NLP +T L+ +F G + + ++ S+G GFV Sbjct: 105 EKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTM 164 Query: 262 ETRQQAEDAIKHMN 303 + ++A++A++ N Sbjct: 165 GSIEEAKEAMQMFN 178 >At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 289 Score = 37.9 bits (84), Expect = 0.004 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 8/64 (12%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294 + +Y+ NL + L +LFS G + +RV S+G GFV Y++ Q+ ++AIK Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263 Query: 295 HMNG 306 ++G Sbjct: 264 SLDG 267 Score = 31.5 bits (68), Expect = 0.36 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%) Frame = +1 Query: 88 FALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQG 243 FA + P + S D + L++ NLP ++ +L LF GN+ V S+G Sbjct: 76 FADVAPPKEQSFSADLK--LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRG 133 Query: 244 IGFVCYETRQQAEDAIKHMNG 306 GFV + + E A + NG Sbjct: 134 FGFVTMSSVSEVEAAAQQFNG 154 >At5g04280.1 68418.m00421 glycine-rich RNA-binding protein Length = 310 Score = 37.5 bits (83), Expect = 0.005 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 8/65 (12%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294 S +++ L P++T L FS FG+I + ++ S+G GF+ + R+ +++I+ Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66 Query: 295 HMNGQ 309 M+G+ Sbjct: 67 EMHGR 71 >At5g03580.1 68418.m00316 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein [Triticum aestivum] GI:1737492; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 101 Score = 37.5 bits (83), Expect = 0.005 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +1 Query: 100 NPENKVSHK-PDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFV 255 N +N S P ++LYI+NL ++ E L +FS FG + S + S+G F+ Sbjct: 3 NDDNHGSSSCPRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFI 62 Query: 256 CYETRQQAEDAIKHMNGQ 309 +E+ A A+ HM+G+ Sbjct: 63 EFESADSAGRAMLHMDGR 80 >At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative DNA binding protein ACBF - Nicotiana tabacum, PID:g1899188 Length = 415 Score = 37.1 bits (82), Expect = 0.007 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +1 Query: 100 NPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQG--IGFVCYETRQ 273 N + T + +++ + +T + L ++F FG + + ++ G GFV Y R Sbjct: 265 NTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRA 324 Query: 274 QAEDAIKHMNG 306 AE A+ +NG Sbjct: 325 CAEQALSVLNG 335 Score = 36.3 bits (80), Expect = 0.012 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 12/115 (10%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQG--KTLKVSFALLNP-ENKVSHKPDTESNLYISNLPPD 171 +E+ H AE+ +NG M + ++++A L E + + P E +++ +L PD Sbjct: 126 IEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGP--EHTVFVGDLAPD 183 Query: 172 MTLERLNTLFSPF------GNITNSRV---SQGIGFVCYETRQQAEDAIKHMNGQ 309 +T L F + N R S+G GFV + + A+ MNGQ Sbjct: 184 VTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQ 238 >At1g27050.1 68414.m03298 homeobox-leucine zipper family protein contains Pfam profile:PF00046 Homeobox domain and Pfam profile:PF00076 RNA recognition motif Length = 444 Score = 36.7 bits (81), Expect = 0.009 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = +1 Query: 124 KPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ-GIGFVCYETRQQAEDAI 291 KP L + LP + ++ L + F +G+I+ R+ + GIG V Y T + AE AI Sbjct: 281 KPPPPPALVVMGLPANCSVLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAI 337 >At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing protein similar to SP|Q14011 Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) {Homo sapiens}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 157 Score = 36.3 bits (80), Expect = 0.012 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Frame = +1 Query: 154 SNLPPDMTLERLNTLFSPFGNITNSRVSQ---GIGFVCYETRQQAEDAIKHMNGQ 309 S L T + L LF+PF + + +Q G GF+ +E+ A+ A+K +NG+ Sbjct: 76 SGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130 Score = 27.9 bits (59), Expect = 4.4 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 93 + +E +DA+KA A NG ++ G+ + V A Sbjct: 112 ITFESEDDAQKALKALNGKIVNGRLIFVETA 142 >At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 451 Score = 36.3 bits (80), Expect = 0.012 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Frame = +1 Query: 43 AFNGLLMQGKTLKVSFALLNPENKVSHKPDTES---NLYISNLPPDMTLERLNTLFSPFG 213 +F G ++ G L +SF+ P V D ++ L++ N+ + T++ + LF+PFG Sbjct: 316 SFKGTVVDGHALILSFSKNKPSGTVGKDLDKDTILTKLHVKNIAFEATMKEVRQLFTPFG 375 Query: 214 NI 219 I Sbjct: 376 QI 377 >At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana} Length = 309 Score = 36.3 bits (80), Expect = 0.012 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +1 Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMN 303 L++ N D T R L F P+G I N R+ + F+ YE ++ A A+ N Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN 111 Score = 28.3 bits (60), Expect = 3.3 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVS-HKPD 132 ++YE EDA +A A N + K + V +A+ + + + + H P+ Sbjct: 95 IQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 139 >At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40 (RSP40) identical to SP|P92965 Arginine/serine-rich splicing factor RSP40 {Arabidopsis thaliana} Length = 350 Score = 36.3 bits (80), Expect = 0.012 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +1 Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMN 303 L++ N D T R L F P+G I N R+ + F+ YE ++ A A+ N Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASN 152 Score = 28.3 bits (60), Expect = 3.3 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVS-HKPD 132 ++YE EDA +A A N + K + V +A+ + + + + H P+ Sbjct: 136 IQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPE 180 >At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative similar to gb|U90212 DNA binding protein ACBF from Nicotiana tabacum and contains 3 PF|00076 RNA recognition motif domains. ESTs gb|T44278, gb|R65195, gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278, gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1 Length = 405 Score = 36.3 bits (80), Expect = 0.012 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQG--IGFVCYETRQQAEDAIKHMNG 306 + +++ L +T + L +FS +G I + ++ G GFV + + AE+A++ +NG Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNG 318 >At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein weak similarity to SP|Q01844 RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma breakpoint region 1 protein) {Homo sapiens}; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00641: Zn-finger in Ran binding protein and others Length = 422 Score = 35.9 bits (79), Expect = 0.017 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGF 252 + +YISNLPPD+T + L LF G + R+ Q G+ Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQV--GRIKQKRGY 315 >At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein weak similarity to SP|Q01844 RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma breakpoint region 1 protein) {Homo sapiens}; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00641: Zn-finger in Ran binding protein and others Length = 422 Score = 35.9 bits (79), Expect = 0.017 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGF 252 + +YISNLPPD+T + L LF G + R+ Q G+ Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQV--GRIKQKRGY 315 >At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 159 Score = 35.9 bits (79), Expect = 0.017 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285 D E ++ L L T F+ +G++ +S++ S+G GFV ++ + +D Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64 Query: 286 AIKHMNGQ 309 AI+ MNGQ Sbjct: 65 AIEGMNGQ 72 >At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7) SP|Q03250 Glycine-rich RNA-binding protein 7 {Arabidopsis thaliana} Length = 176 Score = 35.9 bits (79), Expect = 0.017 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285 D E ++ L L T F+ +G++ +S++ S+G GFV ++ + +D Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64 Query: 286 AIKHMNGQ 309 AI+ MNGQ Sbjct: 65 AIEGMNGQ 72 >At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing protein Length = 987 Score = 35.5 bits (78), Expect = 0.022 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Frame = +1 Query: 61 MQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-- 234 MQ + +L +PE D + L +SNL P +T E+L LFS G + + + Sbjct: 327 MQAQAQSNKGSLGSPEK--GENGDLKKFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSITD 384 Query: 235 SQGIGFVCYETRQQAEDAI 291 S+ I ++ Y ++A A+ Sbjct: 385 SKHIAYIEYSNSEEATAAL 403 >At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing protein low similarity to SP|Q10572 Sex determination protein fox-1 (Feminizing locus on X protein 1) {Caenorhabditis elegans}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 101 Score = 35.5 bits (78), Expect = 0.022 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Frame = +1 Query: 127 PDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-----SQGIGFVCYETRQQAEDAI 291 P+ LYI NLP +T E LF + I R+ ++G FV YE A+ A+ Sbjct: 16 PEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDIYDAKKAV 75 Query: 292 KHM 300 H+ Sbjct: 76 DHL 78 >At1g16610.2 68414.m01990 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 407 Score = 35.5 bits (78), Expect = 0.022 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKP 129 VE++ DAEKA+ +G + GK +K +F L P KVS P Sbjct: 144 VEFKARADAEKAQLYMDGAQIDGKVVKATFT-LPPRQKVSSPP 185 >At1g16610.1 68414.m01989 arginine/serine-rich protein, putative (SR45) similar to arginine/serine-rich protein GI:6601502 from [Arabidopsis thaliana] Length = 414 Score = 35.5 bits (78), Expect = 0.022 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKP 129 VE++ DAEKA+ +G + GK +K +F L P KVS P Sbjct: 144 VEFKARADAEKAQLYMDGAQIDGKVVKATFT-LPPRQKVSSPP 185 >At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 92 Score = 35.1 bits (77), Expect = 0.029 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285 + E ++ L E L FS FG++ +S++ S+G GFV ++ + D Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62 Query: 286 AIKHMNGQ 309 AI+ MNG+ Sbjct: 63 AIEEMNGK 70 >At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 126 Score = 35.1 bits (77), Expect = 0.029 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285 + E ++ L E L FS FG++ +S++ S+G GFV ++ + D Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62 Query: 286 AIKHMNGQ 309 AI+ MNG+ Sbjct: 63 AIEEMNGK 70 >At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 169 Score = 35.1 bits (77), Expect = 0.029 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285 + E ++ L E L FS FG++ +S++ S+G GFV ++ + D Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62 Query: 286 AIKHMNGQ 309 AI+ MNG+ Sbjct: 63 AIEEMNGK 70 >At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 100 Score = 34.7 bits (76), Expect = 0.038 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 8/71 (11%) Frame = +1 Query: 115 VSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETR 270 +SH D E+ +Y++ LP E L + F FG I ++V S+G GFV + Sbjct: 1 MSHPNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREV 60 Query: 271 QQAEDAIKHMN 303 + A A ++ N Sbjct: 61 ESATRACENPN 71 >At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 Length = 105 Score = 34.7 bits (76), Expect = 0.038 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285 + E ++ L E L FS FG++ +S++ S+G GFV ++ + D Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62 Query: 286 AIKHMNG 306 AI+ MNG Sbjct: 63 AIEEMNG 69 >At2g47310.1 68415.m05906 flowering time control protein-related / FCA gamma-related Length = 512 Score = 34.7 bits (76), Expect = 0.038 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 13/129 (10%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNG-LLMQGKTLKVSFALLNPEN-KVSHKP---DTESNLYISNLP 165 ++Y+K E+ A AA G+ L V E ++ P LY+ L Sbjct: 156 IKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLN 215 Query: 166 PDMTLERLNTLFSPFGNITN-------SRVSQGIGFVCYETRQQAEDAIKHMNGQCPIPG 324 T +N +FS +G I + ++ +G FV + ++ A AIK +NG I G Sbjct: 216 KQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRG 275 Query: 325 AG-AVIVKF 348 + +IV+F Sbjct: 276 SDQPLIVRF 284 >At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41 (RSP41) nearly identical to SP|P92966 Arginine/serine-rich splicing factor RSP41 {Arabidopsis thaliana} Length = 357 Score = 33.9 bits (74), Expect = 0.067 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +1 Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMN 303 L++ N T R L F P+G I N R+ + F+ YE ++ A A+ N Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATN 151 Score = 27.9 bits (59), Expect = 4.4 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENK 114 ++YE EDA +A A N + K + V +A+ + +++ Sbjct: 135 IQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSR 172 >At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41 (RSP41) nearly identical to SP|P92966 Arginine/serine-rich splicing factor RSP41 {Arabidopsis thaliana} Length = 356 Score = 33.9 bits (74), Expect = 0.067 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +1 Query: 145 LYISNLPPDMTLER-LNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMN 303 L++ N T R L F P+G I N R+ + F+ YE ++ A A+ N Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATN 151 Score = 27.9 bits (59), Expect = 4.4 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENK 114 ++YE EDA +A A N + K + V +A+ + +++ Sbjct: 135 IQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSR 172 >At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing protein heterogeneous nuclear ribonucleoprotein R, Homo sapiens, PIR:T02673; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 471 Score = 33.9 bits (74), Expect = 0.067 Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 10/109 (9%) Frame = +1 Query: 1 VEYEKHEDAE--KARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDM 174 +EY H AE K + + + VS+A LYI NLP D+ Sbjct: 220 IEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDI 279 Query: 175 TLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAIKH 297 T ERL LF G I + GFV Y R A+K+ Sbjct: 280 TQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKN 328 >At5g41690.1 68418.m05067 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein GI:7673355 from [Nicotiana tabacum]; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 620 Score = 33.5 bits (73), Expect = 0.088 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 7/66 (10%) Frame = +1 Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ-------GIGFVCYETRQQAEDAIK 294 E L+++NLP + + + F G + ++ G GFV + + +AE+A++ Sbjct: 126 EKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQ 185 Query: 295 HMNGQC 312 NG+C Sbjct: 186 KKNGEC 191 Score = 27.5 bits (58), Expect = 5.8 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 7/65 (10%) Frame = +1 Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ-------GIGFVCYETRQQAEDAIK 294 E L+++NL P + + F+ G + + R+ G GFV + + + + A++ Sbjct: 243 EEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALE 302 Query: 295 HMNGQ 309 + NG+ Sbjct: 303 NKNGE 307 Score = 27.5 bits (58), Expect = 5.8 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = +1 Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDAIK 294 + L+++NL P + + F + R+ G GFV + + +A+ A++ Sbjct: 488 KKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQ 547 Query: 295 HMNGQ 309 MNG+ Sbjct: 548 KMNGE 552 >At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing protein similar to SP|P48809 Heterogeneous nuclear ribonucleoprotein 27C (hnRNP 48) {Drosophila melanogaster}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); non-consensus TA donor splice site at exon 6 Length = 379 Score = 33.5 bits (73), Expect = 0.088 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 8/104 (7%) Frame = +1 Query: 7 YEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLER 186 Y AE A+ A G G + + + P+ ++ + ++++ +P ++ Sbjct: 48 YVTFASAEDAKNALKGEHFLGNRI-LEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESD 106 Query: 187 LNTLFSPFGNIT--------NSRVSQGIGFVCYETRQQAEDAIK 294 + F +G IT NS+ +GIGF+ + + ED ++ Sbjct: 107 FRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME 150 >At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing protein low similarity to SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) {Arabidopsis thaliana}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 181 Score = 33.5 bits (73), Expect = 0.088 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 8/66 (12%) Frame = +1 Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAI 291 ++ LY+S L T + L F FGN+ + + +G F+ YET ++A AI Sbjct: 76 KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI 135 Query: 292 KHMNGQ 309 + M+G+ Sbjct: 136 QGMHGK 141 >At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 180 Score = 33.1 bits (72), Expect = 0.12 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 8/59 (13%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAIKH 297 LYI NLP D+T ERL LF G I + GFV Y R A+K+ Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKN 94 >At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing protein similar to nucleolin protein; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 495 Score = 33.1 bits (72), Expect = 0.12 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 8/99 (8%) Frame = +1 Query: 22 DAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTES--NLYISNLPPDMTLERLNT 195 D + + + ++G V++A +P++ H LY+ N+P + + E+L Sbjct: 253 DYSRQKMIDSNFKLEGNAPTVTWA--DPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKE 310 Query: 196 LFSPFGNITNSRVSQG------IGFVCYETRQQAEDAIK 294 LF G +T G GFV Y R A A+K Sbjct: 311 LFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVK 349 >At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 1056 Score = 33.1 bits (72), Expect = 0.12 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--SQGIGFVCYETRQQAEDAIKHMNG 306 +NL++ +L P+ T L LF +G+I V S+G F+ Y ++A A + + G Sbjct: 18 NNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQG 75 >At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF02136: Nuclear transport factor 2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) Length = 422 Score = 33.1 bits (72), Expect = 0.12 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%) Frame = +1 Query: 118 SHKPDTE-SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETR 270 S KP + S+++++NLP D T+E+L F FG I + IGFV +E Sbjct: 267 SIKPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENG 326 Query: 271 QQAEDAIK 294 + ++ + Sbjct: 327 EAVKNVFQ 334 >At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 334 Score = 32.7 bits (71), Expect = 0.15 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294 + LY+ NL + L LF+ G + +RV S+G GFV + Q+ + AI Sbjct: 249 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 308 Query: 295 HMNG 306 +NG Sbjct: 309 SLNG 312 Score = 31.1 bits (67), Expect = 0.47 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Frame = +1 Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVC 258 P + S PD + L++ NL ++ +L LF GN+ V S+G GFV Sbjct: 89 PVERNSFSPDLK--LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 146 Query: 259 YETRQQAEDAIKHMNG 306 T + E A + NG Sbjct: 147 MSTAAEVEAAAQQFNG 162 >At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast / RNA-binding protein cp 29 nearly identical to SP|Q43349 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) {Arabidopsis thaliana} Length = 342 Score = 32.7 bits (71), Expect = 0.15 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294 + LY+ NL + L LF+ G + +RV S+G GFV + Q+ + AI Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316 Query: 295 HMNG 306 +NG Sbjct: 317 SLNG 320 Score = 31.1 bits (67), Expect = 0.47 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Frame = +1 Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVC 258 P + S PD + L++ NL ++ +L LF GN+ V S+G GFV Sbjct: 89 PVERNSFSPDLK--LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVT 146 Query: 259 YETRQQAEDAIKHMNG 306 T + E A + NG Sbjct: 147 MSTAAEVEAAAQQFNG 162 >At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 32.7 bits (71), Expect = 0.15 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294 S L++ L L F+ FG +T + V S+G GFV + A +AIK Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94 Query: 295 HMNGQ 309 M+G+ Sbjct: 95 EMDGK 99 >At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 136 Score = 32.7 bits (71), Expect = 0.15 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIK 294 S L++ L L F+ FG +T + V S+G GFV + A +AIK Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94 Query: 295 HMNGQ 309 M+G+ Sbjct: 95 EMDGK 99 >At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing protein Length = 561 Score = 32.7 bits (71), Expect = 0.15 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 7/67 (10%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNI-------TNSRVSQGIGFVCYETRQQAEDAIKHMN 303 LY+ NL +M+ + L +F FG++ + + +G GFV + + A +A+ ++N Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLN 345 Query: 304 GQCPIPG 324 GQ I G Sbjct: 346 GQLEIAG 352 >At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 278 Score = 32.3 bits (70), Expect = 0.20 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306 +Y+ NLP D+ + LFS +G + + G FV +E + A+DAI +G Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDG 67 >At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1 protein, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana}; cDNA NCBI_gi:15810292 supports a truncated version while protein evidence supports a longer model. Length = 178 Score = 32.3 bits (70), Expect = 0.20 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306 +Y+ NLP D+ + LFS +G + + G FV +E + A+DAI +G Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDG 67 >At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 32.3 bits (70), Expect = 0.20 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306 +Y+ NLP D+ + LFS +G + + G FV ++ + AEDAI +G Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67 >At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 285 Score = 32.3 bits (70), Expect = 0.20 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306 +Y+ NLP D+ + LFS +G + + G FV ++ + AEDAI +G Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67 >At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 303 Score = 32.3 bits (70), Expect = 0.20 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306 +Y+ NLP D+ + LFS +G + + G FV ++ + AEDAI +G Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDG 67 >At5g06210.1 68418.m00693 RNA-binding protein, putative contains similarity to RNA-binding protein from [Nicotiana tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925, [Solanum tuberosum] GI:15822705; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 146 Score = 31.9 bits (69), Expect = 0.27 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 10/91 (10%) Frame = +1 Query: 67 GKTLKVSFALLNPENKV--SHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-- 234 G+ LK S L+N + + S L+I L T + L+ FS G + +++ Sbjct: 9 GRHLK-SVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVM 67 Query: 235 ------SQGIGFVCYETRQQAEDAIKHMNGQ 309 S+G GFV + + +A+ A+ NGQ Sbjct: 68 DRVSDRSKGFGFVTFASADEAQKALMEFNGQ 98 Score = 27.1 bits (57), Expect = 7.7 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 93 V + ++A+KA FNG + G+T+ V +A Sbjct: 80 VTFASADEAQKALMEFNGQQLNGRTIFVDYA 110 >At2g21690.1 68415.m02580 RNA-binding protein, putative similar to Glycine-rich RNA-binding protein from {Sinapis alba} SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 117 Score = 31.9 bits (69), Expect = 0.27 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285 + E ++ L D + L +FS FGN+ +S++ S+ GFV +E + D Sbjct: 4 NVEYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTD 63 Query: 286 AIKHMN 303 AI M+ Sbjct: 64 AIMIMD 69 >At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative similar to Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo sapiens} SP|P26599; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 429 Score = 31.1 bits (67), Expect = 0.47 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVSQGI----GFVCYETRQQAEDAIKH 297 L++ NLP + T E L L PFG + N++ + G F+ +E QA I + Sbjct: 20 LHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISY 74 >At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong similarity to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} Length = 300 Score = 31.1 bits (67), Expect = 0.47 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Frame = +1 Query: 142 NLYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306 ++Y+ NLP D+ + +F +G I + + FV +E + AEDAIK +G Sbjct: 8 SIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDG 67 >At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein G3BP ras-GTPase-activating protein SH3-domain binding protein, Mus musculus, EMBL:MMU65313 Length = 459 Score = 30.7 bits (66), Expect = 0.62 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-----SQG--IGFVCYETRQQAEDA 288 D ++Y+ NLP D T +L +F FG I + + QG GFV +ET + A Sbjct: 290 DDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFETSSGKQSA 349 Query: 289 IK 294 ++ Sbjct: 350 LE 351 >At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 352 Score = 30.7 bits (66), Expect = 0.62 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHM 300 +Y+ +P D+T L +FS +G I + + S+G F+ YE ++ A+ ++ Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97 Query: 301 NG 306 NG Sbjct: 98 NG 99 >At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to 33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana sylvestris] Length = 293 Score = 30.7 bits (66), Expect = 0.62 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHM 300 LY+ N+P + +L +F PFG + + V S+G G+V + A+ AI + Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169 Query: 301 NG 306 +G Sbjct: 170 DG 171 Score = 27.5 bits (58), Expect = 5.8 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +1 Query: 94 LLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 234 +LN K +++ +Y+ NLP + L FS FG I ++RV Sbjct: 197 VLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRV 243 >At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein G3BP ras-GTPase-activating protein SH3-domain binding protein, Mus musculus, EMBL:MMU65313 Length = 460 Score = 30.3 bits (65), Expect = 0.82 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNI------TNSRVSQG--IGFVCYETRQQAED 285 D ++Y+ NLP D T +L +F FG I S QG GFV +ET + Sbjct: 290 DDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQS 349 Query: 286 AIK 294 A++ Sbjct: 350 ALE 352 >At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 130 Score = 29.9 bits (64), Expect = 1.1 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +1 Query: 112 KVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQG 243 + S P + S+L++ ++ RL +FS FG +TN G Sbjct: 49 EASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNEHYFSG 92 >At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear transport factor 2 (NTF2) domain Length = 1294 Score = 29.9 bits (64), Expect = 1.1 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Frame = +1 Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV------SQGIGFVCYE 264 PE + P + + + NLP + T+ + F FG I V S GFV ++ Sbjct: 1064 PEANATIPPANNAAICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFK 1123 Query: 265 TRQQAEDAIK 294 A+ AIK Sbjct: 1124 EENAAQRAIK 1133 >At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 1003 Score = 29.9 bits (64), Expect = 1.1 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNI 219 D E L+I NLP D+T E + F+ FG + Sbjct: 558 DFERTLFIRNLPFDVTKEEVKQRFTVFGEV 587 >At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 169 Score = 29.5 bits (63), Expect = 1.4 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Frame = +1 Query: 133 TESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDA 288 T + +Y+ LP E L F FG I + V SQG GFV ++ + A A Sbjct: 11 TFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRA 70 Query: 289 IKHMN 303 K N Sbjct: 71 CKDPN 75 >At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein contains Pfam domain PF00098: Zinc knuckle Length = 284 Score = 29.5 bits (63), Expect = 1.4 Identities = 14/57 (24%), Positives = 28/57 (49%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309 + LY+ L L LFS +G + + + + FV + + A+DA +++G+ Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGR 67 >At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana sylvestris]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 245 Score = 29.5 bits (63), Expect = 1.4 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 8/67 (11%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAED 285 D E +I L + L F +G++ ++V S+G GF+ ++ ++ ++ Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63 Query: 286 AIKHMNG 306 AI MNG Sbjct: 64 AIAAMNG 70 >At4g16280.1 68417.m02469 flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090 Length = 505 Score = 29.1 bits (62), Expect = 1.9 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +1 Query: 229 RVSQGIGFVCYETRQQAEDAIKHMNGQCPIPGAG-AVIVKF 348 R S+G GFV Y +++ A AI +NG + G +IV+F Sbjct: 6 RQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRF 46 >At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa, putative Length = 333 Score = 29.1 bits (62), Expect = 1.9 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Frame = +1 Query: 94 LLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIG 249 L +P D L++ L T + L + S +G I N R+ S+G G Sbjct: 49 LYDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYG 108 Query: 250 FVCYETRQQ 276 FV YET ++ Sbjct: 109 FVEYETEKE 117 >At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly identical to splicing factor RSZ33 [Arabidopsis thaliana] GI:9843663; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), PF00098: Zinc knuckle Length = 290 Score = 29.1 bits (62), Expect = 1.9 Identities = 14/57 (24%), Positives = 28/57 (49%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQGIGFVCYETRQQAEDAIKHMNGQ 309 + LY+ L L LFS +G + + + + FV + + A+DA +++G+ Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGR 67 >At1g76930.1 68414.m08955 proline-rich extensin-like family protein contains extensin-like region, Pfam:PF04554 Length = 293 Score = 29.1 bits (62), Expect = 1.9 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Frame = +3 Query: 153 QQFTTRHDPRKTQHSFQSFR*HHE*PR-VTRYRLCLLRDP 269 Q +TT H R T H Q + H PR T L LLR P Sbjct: 177 QSYTTLHHHRFTTHLLQLYTTPHHHPRSTTNTNLLLLRTP 216 >At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam profile: PF00168 C2 domain Length = 3427 Score = 29.1 bits (62), Expect = 1.9 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +1 Query: 10 EKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMT 177 E +D E A LM+ + K + +N +SH+PD E NLY +MT Sbjct: 482 EAEDDPEVDSVAGGSKLMEERLTKDEWKAIN--KLLSHQPDEEMNLYSGKDMQNMT 535 >At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam profile: PF00168 C2 domain Length = 4144 Score = 29.1 bits (62), Expect = 1.9 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +1 Query: 10 EKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMT 177 E +D E A LM+ + K + +N +SH+PD E NLY +MT Sbjct: 482 EAEDDPEVDSVAGGSKLMEERLTKDEWKAIN--KLLSHQPDEEMNLYSGKDMQNMT 535 >At1g17370.1 68414.m02118 oligouridylate-binding protein, putative similar to oligouridylate binding protein [Nicotiana plumbaginifolia] GI:6996560; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 419 Score = 29.1 bits (62), Expect = 1.9 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = +1 Query: 103 PENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGN--ITNSRVSQ--GIGFVCYETR 270 PEN + + +Y+ NL P+++ L+ F G I RV + G GFV Y T Sbjct: 253 PENNAQY-----TTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH 307 Query: 271 QQAEDAIKHMNGQCPIPG 324 +A AI+ N + G Sbjct: 308 VEAALAIQMGNTHSYLSG 325 >At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif Length = 177 Score = 29.1 bits (62), Expect = 1.9 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Frame = +1 Query: 136 ESNLYISNLPPDMTLERLNTLFSPFGNITN--------SRVSQGIGFVCYETRQQAEDAI 291 ++ LY+ L ++ L+ F PFG+I + ++ + GFV + R+ A A+ Sbjct: 12 KNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71 Query: 292 KHMNG 306 +M+G Sbjct: 72 DNMDG 76 >At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30) nearly identical to SF2/ASF-like splicing modulator Srp30 [Arabidopsis thaliana] GI:4775270 Length = 268 Score = 29.1 bits (62), Expect = 1.9 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRVS-----QGIGFVCYETRQQAEDAIKHMNG 306 +Y+ NLP D+ + LF +G I + + G FV +E + A+DAI +G Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDG 67 >At4g10610.1 68417.m01735 RNA-binding protein, putative Length = 336 Score = 28.7 bits (61), Expect = 2.5 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +1 Query: 97 LNPENKVSHKPDT-ESNLYISNLPPDMTLERLNTLFSPFGNITNSRV 234 +NP ++ + + +Y+S++ +T E+L LF FG + + R+ Sbjct: 135 MNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRI 181 >At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing protein similar to chloroplast RNA-binding protein cp33 [Arabidopsis thaliana] GI:681912; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) domain Length = 253 Score = 28.7 bits (61), Expect = 2.5 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 11/90 (12%) Frame = +1 Query: 70 KTLKVSFALLNPENK-VSHKPDTES--NLYISNLPPDMTLERLNTLFSPFGNITNSRV-- 234 +T + +A+ E K + P +E+ +YI N+P +T E+L L G + +V Sbjct: 50 RTRFIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMY 109 Query: 235 ------SQGIGFVCYETRQQAEDAIKHMNG 306 S+ GF ++ + A ++ +NG Sbjct: 110 DKYSGRSRRFGFATMKSVEDANAVVEKLNG 139 >At5g02530.1 68418.m00187 RNA and export factor-binding protein, putative BcDNA.LD24793, Drosophila melanogaster, EMBL:AF172637 Length = 292 Score = 28.3 bits (60), Expect = 3.3 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNI-------TNSRVSQGIGFVCYETRQQAEDA 288 +T + LYISNL ++ E + LFS G++ S S+G V + R A A Sbjct: 105 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAA 164 Query: 289 IKHMN 303 +K N Sbjct: 165 VKRYN 169 >At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 28.3 bits (60), Expect = 3.3 Identities = 12/46 (26%), Positives = 26/46 (56%) Frame = +1 Query: 82 VSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219 ++ A ++ + S+ T+ +Y+SN+ ++ ++L FS FG I Sbjct: 226 IAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEI 271 >At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 28.3 bits (60), Expect = 3.3 Identities = 12/46 (26%), Positives = 26/46 (56%) Frame = +1 Query: 82 VSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219 ++ A ++ + S+ T+ +Y+SN+ ++ ++L FS FG I Sbjct: 226 IAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEI 271 >At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 478 Score = 28.3 bits (60), Expect = 3.3 Identities = 12/46 (26%), Positives = 26/46 (56%) Frame = +1 Query: 82 VSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219 ++ A ++ + S+ T+ +Y+SN+ ++ ++L FS FG I Sbjct: 226 IAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEI 271 >At1g51510.1 68414.m05797 RNA-binding protein, putative similar to RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9 from [Homo sapiens], RNA-binding protein Y14 [Xenopus laevis] GI:11034807; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 28.3 bits (60), Expect = 3.3 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +1 Query: 1 VEYEKHEDAEKARAAFNGLLMQGKTLKVSFA 93 +EYEK E+A+ A +A NG + + + V +A Sbjct: 141 IEYEKKEEAQSAISAMNGAELLTQNVSVDWA 171 >At5g59950.3 68418.m07518 RNA and export factor-binding protein, putative Length = 242 Score = 27.9 bits (59), Expect = 4.4 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDA 288 +T + LYISNL + E + LF+ G + V S+G V Y R A A Sbjct: 83 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAA 142 Query: 289 IKHMN 303 +K N Sbjct: 143 VKKYN 147 >At5g59950.2 68418.m07519 RNA and export factor-binding protein, putative Length = 178 Score = 27.9 bits (59), Expect = 4.4 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDA 288 +T + LYISNL + E + LF+ G + V S+G V Y R A A Sbjct: 19 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAA 78 Query: 289 IKHMN 303 +K N Sbjct: 79 VKKYN 83 >At5g59950.1 68418.m07517 RNA and export factor-binding protein, putative Length = 244 Score = 27.9 bits (59), Expect = 4.4 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV-------SQGIGFVCYETRQQAEDA 288 +T + LYISNL + E + LF+ G + V S+G V Y R A A Sbjct: 85 ETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAA 144 Query: 289 IKHMN 303 +K N Sbjct: 145 VKKYN 149 >At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein Length = 458 Score = 27.9 bits (59), Expect = 4.4 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 8/60 (13%) Frame = +1 Query: 139 SNLYISNLPPDMTLERLNTLFSPFGNITNSRV----SQGI----GFVCYETRQQAEDAIK 294 +++Y+ +LP + ++ L F FG ITN + +G+ GFV +E A AI+ Sbjct: 319 TSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRAIE 378 >At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein similar to ubiquitin-specific protease 15 (UBP15) [Arabidopsis thaliana] GI:11993475; contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF01753: MYND finger Length = 631 Score = 27.9 bits (59), Expect = 4.4 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -3 Query: 504 RSERCTNISTVESCRRRTVEPSSCSVIRDRRSSHA 400 + E+ T+ ESC + VE S I R S+HA Sbjct: 488 KDEKKTDTLDTESCVKELVESSMVGAIESRSSTHA 522 >At5g61450.1 68418.m07710 2-phosphoglycerate kinase-related contains weak similarity to 2-phosphoglycerate kinase (GI:467751) [Methanothermus fervidus] Length = 447 Score = 27.5 bits (58), Expect = 5.8 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = +1 Query: 22 DAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLER 186 D +KA ++++G+ L S L+N ENK D E + +N D+T ++ Sbjct: 228 DLKKAMKDGKPIIIEGRHLDPSIYLMNDENKTPSN-DPEKSSSETNSSKDLTSDK 281 >At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing protein ribonucleoprotein, Xenopus laevis, PIR:S40778; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 423 Score = 27.5 bits (58), Expect = 5.8 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 8/86 (9%) Frame = +1 Query: 67 GKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV---- 234 GK +++ + P +S +++ +P + + F FG + ++ Sbjct: 108 GKQVEIKRTI--PRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDH 165 Query: 235 ----SQGIGFVCYETRQQAEDAIKHM 300 S+G GFV YE +ED + H+ Sbjct: 166 STGRSRGFGFVTYE----SEDMVDHL 187 >At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 222 Score = 27.5 bits (58), Expect = 5.8 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 8/61 (13%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAIKHM 300 LYI +P + FS FG + RV S+ GF+ +E + AE A M Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121 Query: 301 N 303 N Sbjct: 122 N 122 >At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 455 Score = 27.5 bits (58), Expect = 5.8 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 10/78 (12%) Frame = +1 Query: 97 LNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGF 252 +NPE + L+I + D ERL F +G++ + + ++G GF Sbjct: 1 MNPEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGF 60 Query: 253 VCYETRQQAEDAI--KHM 300 + + AE I KH+ Sbjct: 61 IVFADPSVAERVIMDKHI 78 >At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 404 Score = 27.5 bits (58), Expect = 5.8 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 8/57 (14%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAI 291 +Y++N+P DM +RL F +G++ + S+G Y+T + A+ A+ Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAAL 225 >At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Length = 404 Score = 27.5 bits (58), Expect = 5.8 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 8/57 (14%) Frame = +1 Query: 145 LYISNLPPDMTLERLNTLFSPFGNITNSRV--------SQGIGFVCYETRQQAEDAI 291 +Y++N+P DM +RL F +G++ + S+G Y+T + A+ A+ Sbjct: 169 IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAAL 225 >At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit GB:CAA77136 from [Nicotiana plumbaginifolia] Length = 589 Score = 27.5 bits (58), Expect = 5.8 Identities = 23/72 (31%), Positives = 34/72 (47%) Frame = +1 Query: 7 YEKHEDAEKARAAFNGLLMQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLER 186 Y+ + A AA NG+ M KTL V A+ + + KP+ E L + + L+R Sbjct: 423 YQDPSVTDIACAALNGIKMGDKTLTVRRAI---QGAIQPKPEQEEVLLYAQ--QQIALQR 477 Query: 187 LNTLFSPFGNIT 222 L +F P G T Sbjct: 478 L--MFQPGGTPT 487 >At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33) nearly identical to SC35-like splicing factor SCL33, 33 kD [Arabidopsis thaliana] GI:9843659 Length = 220 Score = 27.5 bits (58), Expect = 5.8 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 8/67 (11%) Frame = +1 Query: 130 DTESNLYISNLPPDMTLERLNTLFSPFGNITNSRVSQ--------GIGFVCYETRQQAED 285 D ++L + NL D E L F FG + + + + G GFV + A D Sbjct: 33 DLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAAD 92 Query: 286 AIKHMNG 306 A HM+G Sbjct: 93 AKHHMDG 99 >At4g25835.1 68417.m03716 AAA-type ATPase family protein contains Pfam profile: PF00004 ATPase family Length = 506 Score = 27.1 bits (57), Expect = 7.7 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = -3 Query: 396 TCRRSRSIFI-CVRFIRKLDDDGTRSRYWALSVHVFYCIFGLLPGLVAN 253 +C S IF+ I KLD RS + +H+ YC F + L+ N Sbjct: 350 SCCGSERIFVFTTNHIEKLDPALLRSGRMDMHIHMSYCTFSSVKILLRN 398 >At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 451 Score = 27.1 bits (57), Expect = 7.7 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = +1 Query: 61 MQGKTLKVSFALLNPENKVSHKPDTESNLYISNLPPDMTLERLNTLFSPFGNI 219 +QG + NPEN + +Y+SN+ D+ ++L FS FG I Sbjct: 208 VQGNPVVAPAQHFNPEN-------VQRKIYVSNVSADIDPQKLLEFFSRFGEI 253 >At1g21312.1 68414.m02663 RNA recognition motif (RRM)-containing protein contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain Length = 210 Score = 27.1 bits (57), Expect = 7.7 Identities = 9/28 (32%), Positives = 16/28 (57%) Frame = +1 Query: 127 PDTESNLYISNLPPDMTLERLNTLFSPF 210 PD + LY+ LP + + ++ +F PF Sbjct: 108 PDVSNTLYVEGLPSNCSRREVSHIFRPF 135 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.315 0.132 0.384 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,088,258 Number of Sequences: 28952 Number of extensions: 230657 Number of successful extensions: 1020 Number of sequences better than 10.0: 139 Number of HSP's better than 10.0 without gapping: 880 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 978 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 957410176 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.5 bits)
- SilkBase 1999-2023 -