Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)                   25   1.0  
SB_52928| Best HMM Match : PKD (HMM E-Value=0)                         29   3.1  
SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   28   5.4  
SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        27   7.1  
SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)               27   9.4  
SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)              27   9.4  
SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = -1

Query: 278 CRPTACSSTPWCSVSCQ*SGC*LHSG*WSPCLGSHIPSSDGQHCRSRR*GCCCTVSPRGL 99
           C+   CS++  C  SC   GC L+    +         +    C+SR  G  CT S  G 
Sbjct: 224 CQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCTGS--GC 281

Query: 98  G*KCP 84
             KCP
Sbjct: 282 DVKCP 286


>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
          Length = 290

 Score = 25.4 bits (53), Expect(2) = 1.0
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 212 VNNLIIDKRRNTMEYCYKLWVGNGQEIV 295
           +++L++  +++   YC+     NGQ+IV
Sbjct: 130 IHDLLLSLQKHLFAYCHNATSNNGQDIV 157



 Score = 23.4 bits (48), Expect(2) = 1.0
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +2

Query: 293 VRKYFPLNFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKH 445
           +R YF     L+M+G    ++  + +L L        S  R+  G G D H
Sbjct: 183 IRYYFACFQELLMSGPANSLLQSHLSLFLPCAGEILGSVYRLLVGHGSDTH 233


>SB_52928| Best HMM Match : PKD (HMM E-Value=0)
          Length = 1624

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
 Frame = -3

Query: 339 FPAMMSLKFNGKYFLTISCPLPTHSL*QYSMVFRLLSMIRLLTTFWMMEPLP---WLSYS 169
           FPAM +L  NG + +++       SL ++    R     R L     M P+    W   S
Sbjct: 519 FPAMAALTMNGSHAVSLWSYGDGSSLKKHESGPRQFITSRHLYAHTGMFPVTVTVWNRLS 578

Query: 168 KL*RTALS*SPVRMLLYSFSSRSWLEVSADSSTTPALAASMHIANTTRSFILL 10
           K   TAL+   V++ + + S  S L  S  +S T  +  + H   T  S+ ++
Sbjct: 579 KKNETALAYVSVQVPVTNISVPSDLTASLGNSVTFTVKITSHETPTNASYYII 631


>SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 313 KL*THHGRKLCQDHLQKLQPRSEAR 387
           +L  HHGR+L +DHL    PR   R
Sbjct: 199 RLLKHHGRELIKDHLDLPLPRQPKR 223


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 51   SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKAR 191
            +PP+R S    R+     SR    T S+P T +  S RA + R KA+
Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRA-SSRGKAK 1404


>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +3

Query: 102 TSRRNCTTASSPATTTVLS------VRAWNMRAKARAP 197
           TSR NC   + P +T ++S      +R W+ R++++ P
Sbjct: 655 TSRVNCVKFNQPDSTVIISGSYDSTIRCWDCRSRSQEP 692


>SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)
          Length = 354

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 478 QGNELPTDEFSMLVYTIAVGNSLIRGIGCGTELQSEVVVSVN 353
           Q NE+   +FS +  T+       R IGC T  Q + VV+ N
Sbjct: 274 QHNEMEISKFSTVTATVLGVQKASRSIGC-TSCQRQTVVTPN 314


>SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)
          Length = 526

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 308 GSTF*QFPVRCRPTA-CSSTPWCSVSC 231
           G T     +  RP A CS +PWC ++C
Sbjct: 270 GDTNNNVTIAARPKAWCSCSPWCVLTC 296


>SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 216 LTTFWMMEPLPWLSYSKL*RTALS*SPVRMLLYSFSSRSWLEVSA 82
           +  F  ++PL  L+YS+  RTA+   P    ++ +  R+W E  A
Sbjct: 185 VVNFEPLKPLFMLAYSRS-RTAIPAGPALPNIFGYPHRNWKEAGA 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,575,932
Number of Sequences: 59808
Number of extensions: 340753
Number of successful extensions: 899
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)