Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A04f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 33 0.16
Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 28 3.5
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 28 3.5
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 28 3.5
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 28 3.5
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 28 4.7
Z81055-9|CAB02898.3| 562|Caenorhabditis elegans Hypothetical pr... 27 6.2
AL132904-17|CAC35850.1| 240|Caenorhabditis elegans Hypothetical... 27 8.1
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.16
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 42 CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 197
CA + A ++LNY RT L+ +NC P TT + + A N + AP
Sbjct: 38 CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88
>Z99283-1|CAB16536.2| 414|Caenorhabditis elegans Hypothetical
protein Y70C5C.2 protein.
Length = 414
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Frame = +2
Query: 305 FPLNFRLIMAGNYVKIIYRNYNLALKLGS-TTNPSNERIAYGDG-------VDKHTELVS 460
FP+N+ I + NY+ +YN+ LK T+ N+ + DG + K++
Sbjct: 317 FPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIAKYSGYYE 376
Query: 461 WKFITLWENNR--VYFKIHNT 517
W F + N V F+ ++T
Sbjct: 377 WPFFNVSTGNSMLVTFRSNST 397
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 100 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 210
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 100 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 210
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 100 RPRGETVQQHPHRRLRQCCPSELGI*EPRQGLHHPEC 210
RP + V Q HRRL + PS + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -2
Query: 403 GIGCGTELQS--EVVVSVN-DLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLHGVPS 236
G GCG + +S +V +N D D+ ++E + EVL NN S LV+V +P+
Sbjct: 63 GCGCGRKKRSVDDVEGVINMDSDVECNNEELR---EVLENNMKSTPSDSLVSVRSNLPT 118
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/85 (27%), Positives = 34/85 (40%)
Frame = +3
Query: 87 TLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAPXXXXXXXXXXXXXDGTPWSTATS 266
T + TS TTA+S +T S + + + + T ST S
Sbjct: 182 TTTSTTSSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTES 241
Query: 267 CGSATDRKLLESTSH*TLDSSWPET 341
++TD ESTS T DS+ E+
Sbjct: 242 TSTSTDSTTTESTSTST-DSTTTES 265
>Z81055-9|CAB02898.3| 562|Caenorhabditis elegans Hypothetical
protein F01G10.10 protein.
Length = 562
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 269 WVGNGQEIVRKYFPL---NFRLIMAGNYVKII 355
W+ +GQEI R Y PL N + G Y++I+
Sbjct: 13 WLSSGQEITRDYSPLLDKNTSAVNPGIYLRIM 44
>AL132904-17|CAC35850.1| 240|Caenorhabditis elegans Hypothetical
protein Y111B2A.21 protein.
Length = 240
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +2
Query: 287 EIVRKYFPLNFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWK 466
EI++ Y P+ FR + V R+ A K+ S +PS A+G G + T+ W
Sbjct: 116 EIIQ-YLPMPFRTSIPMKLVIFAVRSEESAEKIRSLIDPSMWIAAFGGGTE--TQKFLWS 172
Query: 467 FITL 478
+T+
Sbjct: 173 ELTV 176
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,130,231
Number of Sequences: 27780
Number of extensions: 252610
Number of successful extensions: 1004
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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