Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    39   4e-04
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    38   7e-04
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    31   0.14 
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    29   0.42 
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    29   0.56 
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   1.3  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   5.2  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   9.0  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
 Frame = +1

Query: 103  LYLKNNSISIVKKNAFQNQITLITLDLSDNKIIQIEQYSLPLKKIQYLLLSGNFIGGVIK 282
            L L  N ++ +    FQN   L  L +S N++  +   S     ++ L  +GN +    K
Sbjct: 835  LNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELANLSISSTAQVLLETLYANGNRLSSFPK 894

Query: 283  NNTFSGAKYLRFL-----NLSNFNITTVDDMAFXDLPVLARLNLSHN 408
            N   S  K LRFL     NL N  +   +  +   LP L  LNLS N
Sbjct: 895  NEALS--KSLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGN 939


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
 Frame = +1

Query: 103 LYLKNNSISI--VKKNAFQNQITLITLDLSDNKIIQIEQYSLPLKKIQYLLLSGNFIGGV 276
           LYL+ +S  +  + KN F +  +L++LDLS N++ +I      L ++  L L+ N I G 
Sbjct: 335 LYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITG- 393

Query: 277 IKNNTFSGAKYLRFLNLSNFNITTVDDMAFXDLPVLARLNLSHNQI 414
            +        +L+ L LS  ++T++  +   ++P L +L++  N I
Sbjct: 394 CRTFYHISLSHLQILVLSRNHLTSLSGL--ENVPSLEKLDIRDNSI 437


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
 Frame = +1

Query: 103 LYLKNNSISIVKKNAFQNQITLITLDLSDN-KIIQIEQYSLPL-KKIQYLLLSGNFIGGV 276
           LYL+ N I + K  +F+N   L TL L++N  +   + Y++ + + I  L LS   +  V
Sbjct: 222 LYLEANEIILSKATSFKNLQFLQTLSLANNLNLYSADGYAVDVFQGINNLNLSSTSLADV 281

Query: 277 IKNNTFSGAKYLRFLNLSNFNITTV 351
            +    +  K L FL++S  NI  +
Sbjct: 282 AELPVHTLHK-LTFLDISENNIRDI 305


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +1

Query: 109 LKNNSISIVKKNAFQNQITLITLDLSDNKIIQIEQYSLPLKKIQYLLLSGNFIGGVIKNN 288
           LKN  ISI K + F++Q   I+ D     + +I    LP+    Y  +S   +    K N
Sbjct: 59  LKNRHISIQKFDTFEHQCAFISSDRFVRTLKRIYDLKLPVPLNDYEQISPYLLQ---KYN 115

Query: 289 TFSGA 303
           TFS +
Sbjct: 116 TFSSS 120


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +1

Query: 223  PLKKIQYLLLSGNFIGGVIKNNTFSGAKYLRFLNLSNFNITTVDDMAFXDLPVLARLNLS 402
            P   I+ L LS N    +   + F G +YL    L+N  +  V       +P L  L+LS
Sbjct: 843  PSLDIRNLYLSNNTFVTLDCKHMFLGVRYLE---LANVQLKEVPKYIATSMPNLRVLDLS 899

Query: 403  HNQI 414
            HN I
Sbjct: 900  HNYI 903



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 2/145 (1%)
 Frame = +1

Query: 10   SFGNALNV--LDLSYXXXXXXXXXXXXXXXXTELYLKNNSISIVKKNAFQNQITLITLDL 183
            SF N LN+  LD+SY                    LK +S  +   +  Q+   L+ L  
Sbjct: 663  SFSNLLNLQYLDISYNQLEDLTGLSSLIHLRE---LKVDSNHLWSLDGIQHLDGLLKLSA 719

Query: 184  SDNKIIQIEQYSLPLKKIQYLLLSGNFIGGVIKNNTFSGAKYLRFLNLSNFNITTVDDMA 363
             +N+I ++   +  L +++ LLL  N I  +      S  + L  L L N  +T +   A
Sbjct: 720  CNNRIKELSFTNSNLHRLEELLLGNNEIEEI---EEISSLQNLMVLQLDNNKLTNL--KA 774

Query: 364  FXDLPVLARLNLSHNQIDXFXPNNF 438
               +  L  L +S+N I     + F
Sbjct: 775  SQPMIHLRILRISNNAIHQLEVDQF 799


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 296  LKVLFFMTPPMKFPDSNKY*IFFNGKEYCSIC 201
            LK+   +T  +KFPD+ +Y + FN K+  S C
Sbjct: 940  LKLGASITVFLKFPDTQEYQLHFNRKKIISNC 971


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +1

Query: 211 QYSLPLKKIQYLL---LSGNFIGGVIKN 285
           ++ +PLKKIQ LL   L GN  GG I +
Sbjct: 467 EHQMPLKKIQSLLRYGLCGNLPGGGISD 494


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 262 FIGGVIKNNTFSGAKYLRFLNLSNFNITTVDDM 360
           F+GG +K+    G +++  L  +N N    D+M
Sbjct: 864 FVGGTLKDYQLKGLEWMLSLYNNNLNGILADEM 896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,791,210
Number of Sequences: 5004
Number of extensions: 31884
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)