Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS302A01f
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...   123   1e-29
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...   119   2e-28
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    27   0.79 
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   0.79 
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    27   1.0  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    26   1.8  
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||...    26   2.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   2.4  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   3.2  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   4.2  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   5.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    24   7.3  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    24   9.7  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    24   9.7  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    24   9.7  

>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score =  123 bits (296), Expect = 1e-29
 Identities = 49/84 (58%), Positives = 68/84 (80%)
 Frame = +1

Query: 1   MKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHK 180
           +KPGKV LV  GR+AG+K ++++N D+G+   P+GHA VAG++RYP KV K MG  +I K
Sbjct: 5   LKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAK 64

Query: 181 RSKIKPFVKVVNYNHLMPTRYTVD 252
           RS++KPF+KV+NYNHLMPTRY ++
Sbjct: 65  RSRVKPFIKVINYNHLMPTRYALE 88



 Score = 38.3 bits (85), Expect = 4e-04
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +2

Query: 281 T*KDPAKRKKLRFXTRVRFEERYKSGKNKWFFXKLRF 391
           T  +P++R   +   +  FEE+Y++GK+ WFF  LRF
Sbjct: 100 TFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score =  119 bits (286), Expect = 2e-28
 Identities = 51/100 (51%), Positives = 72/100 (72%), Gaps = 2/100 (2%)
 Frame = +1

Query: 1   MKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHK 180
           +KPGKV L+  GR+AG+K ++++  D+G+   P+GHA VAG++RYP KV K MG  +I +
Sbjct: 5   LKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAR 64

Query: 181 RSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKRP 294
           RS++KPF+KVVNYNHLMPTRY ++    K   +A   K P
Sbjct: 65  RSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEP 104



 Score = 42.7 bits (96), Expect = 2e-05
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +2

Query: 281 T*KDPAKRKKLRFXTRVRFEERYKSGKNKWFFXKLRF 391
           T K+P +R   R   +  FEE+Y+SGK+ WFF  LRF
Sbjct: 100 TFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +1

Query: 1   MKPGKVVLVLSGRYAGRKAIVVKNYDE 81
           + PG V ++L+GR+ G++ +V+   ++
Sbjct: 52  LAPGTVCILLAGRFRGKRVVVLSQLED 78


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 233 QHVIQLTSALKNSAQKT*KDPAKRKKLRFXTRVRFEERYKSGKN 364
           QH   L   + ++ +K+  DP+ R+K  F ++   + +Y+  KN
Sbjct: 145 QHSTHLQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188


>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 134

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 10 GKVVLVLSGRYAGRKAIVVKNYD 78
          G+VVLV  G Y G+ A++V   D
Sbjct: 11 GRVVLVTKGEYTGKLAVIVDIVD 33


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 160 GKNKIHKRSKIKPFVKVVNYNH 225
           G + I  R K  P  K+VNYNH
Sbjct: 28  GNHWIFARFKFYPLNKIVNYNH 49


>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 230 CQHVIQLTSALKNSAQKT*KDPAKRKKLRFXTRVRFEERYKSGKNKWFFXKLR 388
           CQ ++Q+T A  NSA  +    AK       +R++ E      K   +  KLR
Sbjct: 115 CQKLLQVTKAQTNSATGSEALMAKNFLSNLASRIQTESAQFRKKQSTYLKKLR 167


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 65  SRITTKVPPTSHTGMPSSLVSTGT 136
           SR+ T +PP S + +P+  +ST +
Sbjct: 177 SRLPTPLPPPSSSSLPTGTISTNS 200


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 95  LSEVPSS*FLTTIALRPAYRPLRTSTTLPG 6
           L E+P + F  T+    AY P   S T+ G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 142 KVHKRMGKNKIHKRSKIKPFVKVV 213
           K+ KR+G   I   SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 264 FKAEVNCITCWHQVIIVYNLDERLYLGPLVDFILSH 157
           F   V  I C H V  + +   ++  GP ++F++ H
Sbjct: 90  FDNRVGVIECIHLVNFMCHDSLKINFGPRINFVIGH 125


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 189  LGPLVDFILSHPLVHFPGVPVDTSDEGMPVWLVGGTFV 76
            LGP+ +    + L HFP    DT +   P    GGT V
Sbjct: 1364 LGPIGETFEVNGLSHFPSDIEDTIERSHPRIARGGTAV 1401


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 288 FQVFCAEFFKAEVNCITCWHQVIIVYNLDERLY 190
           +QVFC  F  A+   I   +Q++ V NL E  Y
Sbjct: 316 YQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 160 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKF 270
           G+ KIH     + +++  N+ H+  TR+     F KF
Sbjct: 85  GEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSEFCKF 121


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
            2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 45   GSQGYRSQELRRRYLRQAI-RACLRRWYRQVPPESAQE 155
            G+QG  +QE++ +    AI R  +R+W   V PE  Q+
Sbjct: 912  GAQG-DTQEVKSKKEGMAIVRDIMRQWRSNVKPEMTQQ 948


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,470
Number of Sequences: 5004
Number of extensions: 31715
Number of successful extensions: 98
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)