Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A01f
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0470 - 10700092-10700505 118 2e-27
10_08_0951 - 21769342-21769752 117 4e-27
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 31 0.25
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 30 0.76
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 30 0.76
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 28 2.3
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 28 2.3
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541... 28 3.1
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301... 28 3.1
01_06_1350 + 36505926-36505978,36506081-36506176,36506255-365063... 28 3.1
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 27 4.1
08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,561... 27 5.4
03_02_0319 - 7421357-7421757,7421768-7421843,7424695-7424796,742... 27 7.1
01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883 27 7.1
01_01_0760 + 5860893-5861065,5861549-5862443 27 7.1
09_03_0139 + 12692844-12694982 26 9.4
03_05_0692 + 26800698-26800704,26802174-26802304,26802747-268028... 26 9.4
>02_02_0470 - 10700092-10700505
Length = 137
Score = 118 bits (284), Expect = 2e-27
Identities = 47/88 (53%), Positives = 70/88 (79%)
Frame = +1
Query: 1 MKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHK 180
+KPGK V++L GRYAGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++ K K
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAK 64
Query: 181 RSKIKPFVKVVNYNHLMPTRYTVDFSFE 264
+S++K F+K+VN+ H+MPTRYT+D F+
Sbjct: 65 KSRVKCFLKLVNFTHIMPTRYTLDVDFK 92
Score = 41.1 bits (92), Expect = 3e-04
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +2
Query: 326 RVRFEERYKSGKNKWFFXKLRF 391
+ R EER+K+GKN+WFF KLRF
Sbjct: 116 KARLEERFKTGKNRWFFTKLRF 137
>10_08_0951 - 21769342-21769752
Length = 136
Score = 117 bits (281), Expect = 4e-27
Identities = 47/92 (51%), Positives = 72/92 (78%)
Frame = +1
Query: 1 MKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHK 180
+KPGK V++L GR+AGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++ K K
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAK 64
Query: 181 RSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSA 276
+S++K F+K+VN+ HLMPTRYT+D ++ +A
Sbjct: 65 KSRVKCFLKLVNFTHLMPTRYTLDVDLKEVAA 96
Score = 39.9 bits (89), Expect = 7e-04
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +2
Query: 326 RVRFEERYKSGKNKWFFXKLRF 391
+ R E+R+K+GKN+WFF KLRF
Sbjct: 115 KARLEDRFKTGKNRWFFTKLRF 136
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 31.5 bits (68), Expect = 0.25
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3
Query: 24 GPKWPVRGSQGYRSQELRRRYLRQAIRACLRRWYRQ--VPPE-SAQEDGKE*N-PQEVQD 191
G KW + + RS E +R ++ +AIR +R + ++ +PP DG E N +EV D
Sbjct: 1000 GNKWDMCTKEHSRSNEFKRLFVPEAIRKLIRPYDKELSIPPVFPGVHDGNEVNSKEEVND 1059
Query: 192 KA 197
+
Sbjct: 1060 SS 1061
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 29.9 bits (64), Expect = 0.76
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 39 VRGSQGYRSQELRRRYLRQAIRACLRRWYRQVPPESAQ--EDGKE*NPQEVQDKAFRQ 206
V G+ G + ++RR+L QA+ + R R PP +A E + P +++ AF +
Sbjct: 24 VAGAGGRKRGRVQRRHLTQALESFWRHAPRPAPPAAAARGEANRSWQPPPLENPAFEE 81
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 29.9 bits (64), Expect = 0.76
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 7 PGKVVLVLSGRYAGRKAIVVKNYDEG 84
PG V+++L+GRY G++ + +K G
Sbjct: 77 PGTVLILLAGRYMGKRVVFLKQLKSG 102
>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +1
Query: 124 IDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSF----EKFSAKDLK 288
I Y R++ M ++ + K+K F +NY+H R T ++ E S KDLK
Sbjct: 919 IGTYNRELTSNMRILRMERCDKLKDFTLFLNYDHFRVERKTWQWTILPFEEMHSLKDLK 977
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 28.3 bits (60), Expect = 2.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 7 PGKVVLVLSGRYAGRKAIVVKNYDEG 84
PG V+++L+GR+ G++ + +K G
Sbjct: 100 PGTVLILLAGRFMGKRVVFLKQLKSG 125
>08_02_1498 +
27553449-27553730,27553834-27553946,27554063-27554129,
27554310-27554402,27554516-27554659,27554860-27554954,
27555120-27555412,27555514-27555632,27555742-27556094,
27556177-27556286,27556403-27556512,27556802-27557671
Length = 882
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 28 LSGRYAGRKAIVVKNYDEGTSD-KPYGHAFVAGIDRYPRKVHKRMGKNKI 174
L R AG + ++ + GT D G V G+D R+VH G +
Sbjct: 599 LEHRMAGVYTVTIRGLNTGTLDLTTNGWGHVVGLDGERRRVHSEQGMGAV 648
>04_03_0540 +
16929782-16929834,16929937-16930032,16930111-16930185,
16930819-16930893,16930987-16931209,16931303-16931546,
16932111-16932568,16932647-16932928,16933032-16933733
Length = 735
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 255 EVNCITCWHQVIIVYNLDERLYLGPLVDFILSHPLVHF 142
E + WH++I YNL++ +YL + D V+F
Sbjct: 313 EEEFVAAWHKLIRDYNLEKSVYLRHIWDIRRKWAFVYF 350
>01_06_1350 +
36505926-36505978,36506081-36506176,36506255-36506329,
36506964-36507038,36507132-36507348,36507442-36507685,
36508250-36508707,36508786-36509067,36509171-36509872
Length = 733
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 255 EVNCITCWHQVIIVYNLDERLYLGPLVDFILSHPLVHF 142
E + WH++I YNL++ +YL + D V+F
Sbjct: 311 EEEFVAAWHKLIRDYNLEKSVYLRHIWDIRRKWAFVYF 348
>02_05_1276 + 35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 108 MPVWLVGGTFVVILDYDSLATRVPAT 31
+ WLVGGT + I+ +L R+PA+
Sbjct: 1111 LTAWLVGGTALQIVSVPALNFRIPAS 1136
>08_01_0649 +
5607234-5608397,5609358-5609513,5609598-5609796,
5612419-5613608,5614505-5614660,5614742-5615041
Length = 1054
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +1
Query: 70 NYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTV 249
++DE HA G + + G + I P +K++ HL TR+T
Sbjct: 613 SHDEDDVSAWIAHAVRRGAEEIDLSARRHHGYPVPDYKHFISPKIKILKLTHLGTTRFTA 672
Query: 250 D 252
D
Sbjct: 673 D 673
>03_02_0319 -
7421357-7421757,7421768-7421843,7424695-7424796,
7424911-7424982
Length = 216
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 57 YRSQELRRRYLRQAIRACLRRW 122
YRS E ++Y I CL RW
Sbjct: 51 YRSGETHQKYKELTIEICLHRW 72
>01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883
Length = 424
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 148 HKRMGKNKIHKRSKIKPFVKVVNYNHL 228
HKR+G + SK KPF+K++ ++ L
Sbjct: 298 HKRIGPESDDRTSKGKPFLKMMAFSPL 324
>01_01_0760 + 5860893-5861065,5861549-5862443
Length = 355
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -2
Query: 195 LYLGPLVDFILSHPLVHFPGVPVDTSDEGMPVWLVGGTFVVI 70
LY GP + ++ H + G S G W+VG +++
Sbjct: 127 LYTGPTISPLIHHRVFAGGGHEASASGSGRTRWIVGTVLILL 168
>09_03_0139 + 12692844-12694982
Length = 712
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 7 PGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAG 123
P V L+ G Y GRK +V Y S +G A AG
Sbjct: 527 PTLVQLIRDGAYRGRKNAMVSLYGLLQSAANHGRAIAAG 565
>03_05_0692 +
26800698-26800704,26802174-26802304,26802747-26802899,
26803025-26803092,26803739-26803745,26803931-26804038,
26804749-26804919,26805007-26805090
Length = 242
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 192 KAFRQGCKL*SLDANTLYS*LQL*KIQRKRPEKTLLNVRSCVSTREYVLK 341
K + + +L DA TLYS L +Q + +K LL+ + CV R +K
Sbjct: 154 KIYTKALELDYFDA-TLYSNRSLCYLQIGKAQKALLDAKKCVKLRPKWMK 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,542,807
Number of Sequences: 37544
Number of extensions: 205564
Number of successful extensions: 684
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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