Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A01f
(394 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0) 146 6e-36
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30) 28 2.3
SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_48281| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13) 26 9.5
SB_47606| Best HMM Match : 7tm_1 (HMM E-Value=0.0015) 26 9.5
>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
Length = 168
Score = 146 bits (354), Expect = 6e-36
Identities = 64/89 (71%), Positives = 76/89 (85%)
Frame = +1
Query: 1 MKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHK 180
+K GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP KV KRMGK + K
Sbjct: 5 IKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKKRTAK 64
Query: 181 RSKIKPFVKVVNYNHLMPTRYTVDFSFEK 267
RSK+KPFVKV NYNHLMPTRY+VD +K
Sbjct: 65 RSKVKPFVKVFNYNHLMPTRYSVDVPLDK 93
Score = 46.4 bits (105), Expect = 8e-06
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +2
Query: 287 KDPAKRKKLRFXTRVRFEERYKSGKNKWFFXKL 385
+DPA +KK + EERYKSGKNKWFF KL
Sbjct: 102 RDPALKKKALREVKSTLEERYKSGKNKWFFQKL 134
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 29.1 bits (62), Expect = 1.3
Identities = 32/123 (26%), Positives = 49/123 (39%)
Frame = -2
Query: 378 WKNHLFFPLLYLSSKRTRVXKRSFLRLAGSFQVFCAEFFKAEVNCITCWHQVIIVYNLDE 199
W + +F L Y SK+ R K+ F GS + K+ + +T + + + E
Sbjct: 1497 WWSKYYFSLKY-QSKQARHLKKQFSGDDGSSGDHMQYYEKSGYDVLTIFPKEL------E 1549
Query: 198 RLYLGPLVDFILSHPLVHFPGVPVDTSDEGMPVWLVGGTFVVILDYDSLATRVPAT*DQH 19
++ L DF+ S PL D DEG+ L V L+ D+ VP H
Sbjct: 1550 KMGYEELQDFVSSFPLKRGKAKHEDEEDEGVVGELKASFRVYPLEEDTRPDDVPRLHGSH 1609
Query: 18 YFT 10
T
Sbjct: 1610 QET 1612
>SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)
Length = 289
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +3
Query: 66 QELRRRYLRQAIRACLRRWYRQVPPESAQEDGKE*NPQEVQDKAFRQGCKL*SLDANTLY 245
+E R+ L A R R Y + PE GK P+ + +R GCK + N LY
Sbjct: 171 RETSRKELEYASR--FRPAYARYAPELGCRTGKNQEPKRITRVQWRFGCKFPNPVTNELY 228
Query: 246 S 248
+
Sbjct: 229 A 229
>SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 76 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYN 222
D+ D Y + AG+ + + HK+ G K + KP +K VN N
Sbjct: 198 DDDIDDDEYHPGYSAGLKKRLKAAHKQRGYTKAFAKRGTKP-MKEVNSN 245
>SB_48281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +3
Query: 75 RRRYLRQAI---RACLRRWYRQVPPESAQEDG---KE*NPQEVQDKAFRQGCK 215
+RR L I +AC+ +WY++V P +A + G K N + ++ K F+ K
Sbjct: 6 KRRTLENIIENFKACVLKWYQEVDPTNAIKRGQIAKTFNDEIIRFKRFQAAYK 58
>SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +1
Query: 103 GHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 282
GH F++ ID++ RK HK +KI R+ IK ++Y+ + T+ +D ++ A
Sbjct: 99 GHRFLSLIDKHFRKDHK---LSKIFNRNTIK-----ISYSCMSNTKQIIDSHSKRIIASS 150
Query: 283 L 285
+
Sbjct: 151 I 151
>SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 226 SDYSLQP*RKALSWTSCG 173
S Y ++P K+L W SCG
Sbjct: 2 SSYRIKPKNKSLGWVSCG 19
>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
Length = 829
Score = 26.2 bits (55), Expect = 9.5
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 118 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLK 288
A I + ++ R+ K+ K SK+ V YN L R +FS E S KD K
Sbjct: 430 ASIYKAGQETFFRLFTQKLEKLSKLLETEFVEAYNQLEGDRPNFEFSLEIASQKDDK 486
>SB_47606| Best HMM Match : 7tm_1 (HMM E-Value=0.0015)
Length = 293
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 94 KPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPF 201
KP+ F A ++ Y R + + K H SKIK +
Sbjct: 52 KPFFQRFYASVNNYNRDITAKATKRTPHLVSKIKRY 87
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,102,389
Number of Sequences: 59808
Number of extensions: 236617
Number of successful extensions: 673
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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