Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS302A01f
(394 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 141 1e-34
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 141 1e-34
U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical pr... 30 0.68
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 29 0.90
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 29 0.90
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 29 0.90
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 29 0.90
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 29 0.90
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 29 0.90
Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kin... 28 2.1
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 28 2.7
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 3.6
AC024805-8|AAK39337.2| 169|Caenorhabditis elegans Hypothetical ... 27 3.6
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 27 4.8
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 27 6.3
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 26 8.4
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 141 bits (342), Expect = 1e-34
Identities = 66/100 (66%), Positives = 80/100 (80%), Gaps = 2/100 (2%)
Frame = +1
Query: 1 MKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHK 180
MKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK KI K
Sbjct: 5 MKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEK 64
Query: 181 RSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKRP 294
R+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P
Sbjct: 65 RNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAP 104
Score = 52.4 bits (120), Expect = 1e-07
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +2
Query: 287 KDPAKRKKLRFXTRVRFEERYKSGKNKWFFXKLRF 391
K P+K++K + +FEERYK+GKNKWFF KLRF
Sbjct: 102 KAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 141 bits (342), Expect = 1e-34
Identities = 66/100 (66%), Positives = 80/100 (80%), Gaps = 2/100 (2%)
Frame = +1
Query: 1 MKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHK 180
MKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK KI K
Sbjct: 5 MKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEK 64
Query: 181 RSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKRP 294
R+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P
Sbjct: 65 RNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAP 104
Score = 52.4 bits (120), Expect = 1e-07
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +2
Query: 287 KDPAKRKKLRFXTRVRFEERYKSGKNKWFFXKLRF 391
K P+K++K + +FEERYK+GKNKWFF KLRF
Sbjct: 102 KAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
>U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical
protein K06A1.6 protein.
Length = 937
Score = 29.9 bits (64), Expect = 0.68
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 297 AGSFQVFCAEFFKAEVNCITCWHQV 223
AGS ++ C EF K V IT WH +
Sbjct: 69 AGSQEIVCDEFTKKLVAAITTWHDI 93
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 29.5 bits (63), Expect = 0.90
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +1
Query: 88 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 249
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 250 --DFS-FEKFSAKDLKRP 294
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 29.5 bits (63), Expect = 0.90
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +1
Query: 88 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 249
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 250 --DFS-FEKFSAKDLKRP 294
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 29.5 bits (63), Expect = 0.90
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +1
Query: 88 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 249
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 395
Query: 250 --DFS-FEKFSAKDLKRP 294
D S F+ F +DL P
Sbjct: 396 IDDTSNFDDFPDEDLTWP 413
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 29.5 bits (63), Expect = 0.90
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 118 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 267
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 29.5 bits (63), Expect = 0.90
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 118 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 267
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 29.5 bits (63), Expect = 0.90
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 118 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 267
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kinase
protein.
Length = 404
Score = 28.3 bits (60), Expect = 2.1
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +1
Query: 88 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 249
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 285 SDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 344
Query: 250 --DFS-FEKFSAKDLKRP 294
D S F+ F +DL P
Sbjct: 345 IDDTSNFDDFPDEDLTWP 362
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 27.9 bits (59), Expect = 2.7
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +1
Query: 1 MKPGKVVLVLSGRYAGRKAIVVK 69
+ PG V++VL+GR+ G++ + +K
Sbjct: 71 LTPGTVLIVLAGRHKGKRVVFLK 93
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 118 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 267
AG++R V + N+ KR KI + YNHL+P T+D+S K
Sbjct: 386 AGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430
>AC024805-8|AAK39337.2| 169|Caenorhabditis elegans Hypothetical
protein Y51H7C.4 protein.
Length = 169
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 219 IVYNLDERLYLGPLVDFILSHPLVHFPGVPVDTSDEGMPVWLVGGTFVVI 70
I + L ER PL+ L ++ G +S+ +P+WL G F+++
Sbjct: 54 IRFFLSERS-AAPLISMSLGQTAIYLSGTIDLSSEPPIPIWLRNGDFLIM 102
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 89 PTSHTGMPSSLVSTGTPGKCTRGWERIKSTRGP 187
P G P + + G PG+ RG +R GP
Sbjct: 175 PAGDAGAPGQVGAPGNPGQAGRGGQRSHGLPGP 207
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 89 PTSHTGMPSSLVSTGTPGKCTRGWERIKSTRGP 187
PT G P G+PG RG +R + GP
Sbjct: 181 PTGDAGAPGQPGHPGSPGNPGRGGQRSRGLPGP 213
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 19 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRY 135
++ ++G +G KA+ Y + D PYG + + G+ Y
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY 214
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 19 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRY 135
++ ++G +G KA+ Y + D PYG + + G+ Y
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY 214
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 19 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRY 135
++ ++G +G KA+ Y + D PYG + + G+ Y
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,824,697
Number of Sequences: 27780
Number of extensions: 176161
Number of successful extensions: 669
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -